Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2898 188 6e-43 seq2295 159 3e-34 >seq2898 Length=111689 Score = 188 bits (208), Expect = 6e-43 Identities = 578/881 (66%), Gaps = 21/881 (2%) Strand=Plus/Minus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || || || || ||||||||||| ||| | || ||||| | ||| || || | Sbjct 28380 GCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATC 28321 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 || ||| | | ||||| ||||||| || || || || ||||| || || || | ||| Sbjct 28320 CCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAAC 28261 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | ||| || | || ||||| || | || |||||||| || |||| ||| Sbjct 28260 GACAGTTTGAAA--GAAATCGAAGGCAGCTTCCAAGCTCTGCAACGATCCTGCAGTGGCA 28203 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 | | ||||| || || | ||||||||||||||||| || | || ||||| || |||| Sbjct 28202 GGGAGGACTTCAAAGTATCGATTCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGG 28143 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | || | | ||||||||||||||||| || || || || || ||||| | || Sbjct 28142 GTCTGGCGTCCTGGAACGAACCCTACAAGGGTAATTTCGGACAGCTGATGATGTTGAAAC 28083 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCT 32534 ||||| ||| || | || || ||||| || |||| || ||||| || | ||||| | Sbjct 28082 AGGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGTTGGACCCTGGCTGATCCAT 28023 Query 32535 TTTATTTTATGCAC-GACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTT 32593 | | | || | ||| ||| || || || | || || || || || || || || Sbjct 28022 TCT-TCTTCTTCACTGACAAGGTTAAGAGGAAGCGCTTCGTTGACTCTGTGAAGGACTTC 27964 Query 32594 TTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAA 32653 | | |||||||||||||| |||||||||||||| ||||||||||| || || || Sbjct 27963 CTTGAAACCTGGAAATTCTTTGATGGAGTGGACATTGACTGGGAGTTCCCTGGTGGTAAG 27904 Query 32654 GGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTGTTA 32713 || || ||||| | ||||||| | || |||| |||| ||| | || | Sbjct 27903 GGCGCTAACCCTGATCTCGGTAGCCCTGA---TGACGGTCACATCTACGTCGAGCTGATG 27847 Query 32714 CAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAA-ACGGGCAAAACGTACGAGT 32771 | ||| || | ||||| |||| || || | ||| || || || | ||||| Sbjct 27846 AAGGAACTGAGAGAGATGCTTAACGAGCTGTC--TGCCAAGACTGGAAAGAAATACGAAC 27789 Query 32772 TGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGCGC 32831 ||||| || || || | || ||||| ||| || || | || |||| || | Sbjct 27788 TGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTAGTAGACTACAAAGCGGCTC 27729 Query 32832 AAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAACA 32891 | ||||| | || | || || | ||||| |||||||| || || || ||||| ||| Sbjct 27728 AGCAGTACATGGACCACATCTTCTTGATGAGCTACGACTTCAAGGGAGCTTGGTCAAACG 27669 Query 32892 CCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTACA 32951 | | | ||| | || | | || ||||||| ||||| ||| | || |||| Sbjct 27668 ACACTCTTGGCCACCAAGCTGCCCTGCACGCTCCCGCCTGGAACCCCAAGGAGACTTACA 27609 Query 32952 CCACAGATCACGCTGTTAAAT---TGTTAACAAGTCAAGGTGT-AGCTTCTTACAAAATC 33007 | || || || ||| |||| |||| | ||| || || ||| || | ||||| Sbjct 27608 CAACTGACTTCGGTGTCAAATTCCTGTTGGC---TCAGGGAGTCAGC-CCTAAGAAAATT 27553 Query 33008 ATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 | || || | || |||||||| || || ||||| || || Sbjct 27552 GTCGTTGGTGTAGCTATGTACGGCCGTGGTTGGACTGGAGT 27512 >seq2295 Length=223346 Score = 159 bits (176), Expect = 3e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 109246 GAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCTCGTGGTTTGAAACAGCAACCCGAT 109305 |||| ||| |||||||||| |||| ||| ||||| || | || || |||| || Sbjct 101906 GAAGCTGCGCGTTTGCGCAGTTTTAAAGACTGGCCGCGATGCATGCGGCAAAAACCAGAG 101965 Query 109306 AAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATAAAACCAAATGTTTTTAT 109365 |||| |||||||| || || | ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 101966 GAACTTGCCGAGGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTAT 102025 Query 109366 TGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGTGGAAACTGCACGCGCGT 109425 || || |||||||||||||||||||| || || | ||| ||| ||| ||||||||| Sbjct 102026 TGCGATGGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGC 102085 Query 109426 TGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAGGGTCGAGATTATGTGCAAAA 109481 ||||| || || ||| | |||||| ||| || ||||| || || || || || || Sbjct 102086 TGGTTCGATCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACAGAA 102141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425328577957000