Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2898 205 8e-48 seq2205 104 2e-17 seq1608 91.5 1e-13 >seq2898 Length=111689 Score = 205 bits (226), Expect = 8e-48 Identities = 770/1191 (65%), Gaps = 29/1191 (2%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 |||||||||||||| || | ||| |||||||| || ||||||||||| || |||| ||| Sbjct 27203 ATATTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCAAGCGAACAGACCA 27262 Query 95889 CCTAACTTGTTTTGTTCC--ACATATCGACCTTTAGCTATAACAGAATCAACACTATCAT 95946 |||| ||| || | ||| |||||| | || | || || || ||||| Sbjct 27263 CCTAGCTTATTAT--TCCTTACATATTTGGCCTTCTCAATTGTCGATCTGGCATCATCAT 27320 Query 95947 ATGAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAA 96006 ||| ||||| || || | || ||| ||||| | |||| || || |||||| Sbjct 27321 ATGTAATTAGGTCACCAGTTTCCTTCCTAAATACGTAAGGTGCTTGAGCCACTTTGTCAT 27380 Query 96007 ATT-----TAACAATATATTTGTTTA-TTTCGTTTTTGATTTGGCGATAATCAACAACGC 96060 | | | || | ||| | ||||||| || | | || || || || | Sbjct 27381 AATGGTACTCCCACTTGCCTTGAGCAATTTCGTTGGCTATCTCTCTGTAGTCCACTACAC 27440 Query 96061 CATCTTCCCAAGTGCCCGAAAC-GGGCCCGTTACTACTTCCCAAAAAATAGTTATC-GTT 96118 |||| | ||| || || || ||||| || |||| ||| ||| | | || || Sbjct 27441 CATCCTGCCAGGTACCTTTGACCGGGCCAGTGGCTACA--CCAGTGAATGGGTTTCCGTC 27498 Query 96119 TTCGTAAT--TTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATT 96176 || |||| ||||| ||||||||| || || |||||||| || || || || | |||| Sbjct 27499 TTTGTAACCGTTGAC--TCCAGTCCAACCACGGCCGTACATAGCTACACCAACGACAATT 27556 Query 96177 TTGCGCGGGTCCACGCCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGC 96236 || ||| || || ||| || ||||| || | ||| || |||| | Sbjct 27557 TTCTTAGGGCTGACTCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTC 27616 Query 96237 TCGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGAC 96296 || || |||||||| || |||| ||| | || ||||| || | | ||||||| Sbjct 27617 TCCTTGGGGTTCCAGGCGGGAGCGTGCAGGGCAGCTTGGTGGCCAAGAGTGTCGTTTGAC 27676 Query 96297 CACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACG 96356 || || || || || ||||||||||| | || || | ||| | | ||| || || | Sbjct 27677 CAAGCTCCCTTGAAGTCGTAGCTCATCAAGAAGATGTGGTCCATGTACTGCTGAGCCGCT 27736 Query 96357 TCGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTAC 96416 | ||| | |||||| ||| ||||| || | ||||| || |||| ||||| Sbjct 27737 TTGTAGTCTACTACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTAT 27796 Query 96417 GTTTTGCCCGTTT--GCAGTTGCAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAA 96474 | || || || | |||| || ||||| | |||| | | || |||||| | || Sbjct 27797 TTCTTTCCAGTCTTGGCAGA--CAGCTCGTTAAGCATCTCTCTCAGTTCCTTCATCAGCT 27854 Query 96475 TGTTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGC 96534 | ||| ||| | |||| || | | ||||| ||||| ||||| ||||| | Sbjct 27855 CGACGTAGATGTGACCGTCA---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCAC 27911 Query 96535 CCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTC 96594 | || || |||||||| ||||||||||| || || |||||||| | | || || Sbjct 27912 CAGGGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTCCAGGTTTCAAGGAAGTCCT 27971 Query 96595 TGACGGAGTCTACAAACACGC-GCCGTTTTTCCGCGTC-GTGCATGTAATAGAACGGGTC 96652 | || ||||| || || ||| || || || ||| ||| | | | |||| || || Sbjct 27972 TCACAGAGTCAACGAA-GCGCTTCCTCTTAACCTTGTCAGTG-AAGAAGAAGAATGGATC 28029 Query 96653 GGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGC 96712 | ||| ||||| || || | || || | || || |||| || | ||| |||| Sbjct 28030 AGCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAA 28089 Query 96713 CGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTG 96772 | ||||| ||| || || || || |||||||| |||||||| | | || |||||||| Sbjct 28090 CATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTTCCAGGACGCCAGACCCTTTTG 28149 Query 96773 CGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTG 96832 ||||| || | || ||||||||||||||||| | ||||| || || | ||| Sbjct 28150 TGGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATACTTTGAAGTCCTCCCTGCCACT 28209 Query 96833 GCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCC 96892 ||| || |||||||| |||| || || || || ||| | ||||| | ||| Sbjct 28210 GCAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCC 28269 Query 96893 GTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCAC 96952 || || || || || || || || ||||||| | ||| | | || || | || || Sbjct 28270 ATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTAC 28329 Query 96953 TTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 ||| || || || || | || ||||||||||| || || || || Sbjct 28330 GCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGC 28380 >seq2205 Length=656796 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||| || |||| || || ||||| |||||||| ||||| ||||| | Sbjct 546111 CCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAA 546170 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || || | ||||| || || ||||| || Sbjct 546171 AGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGA 546230 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || ||||| ||| || | | | |||||| | |||| Sbjct 546231 ATGCCCTCTTTGTCCTGGATTTTTGC--CTTTACATTCTCAATAGTGTCTGAAGCCTCCA 546288 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| ||||| || || ||||||||| Sbjct 546289 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATT 546338 Score = 100 bits (110), Expect = 2e-16 Identities = 171/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||| || || | || || ||||| ||||| || ||||||||||| | Sbjct 548975 CCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAG 548916 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || ||||| ||||| || || | ||||| || || ||||| || Sbjct 548915 AGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGG 548856 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || ||||| |||||| | | | |||||| | |||| Sbjct 548855 ATGCCCTCTTTGTCCTGAATCTTTGC--CTTCACATTCTCAATAGTGTCCGAAGCCTCCA 548798 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCTT 16946 || | ||||||||| || || ||||| ||||| || || || |||||| | ||| | Sbjct 548797 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATTGTAGAGCTGT 548738 Query 16947 ATTAAT 16952 | |||| Sbjct 548737 AATAAT 548732 >seq1608 Length=32450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || ||||| || || ||||| ||||||||||| | | Sbjct 29618 CCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 29559 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| || || || || || || | || || ||||| || || || Sbjct 29558 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 29499 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| ||||| ||| || || | | | ||||||| ||||| Sbjct 29498 ATGCCTTCTTTGTCTTGAATTTTGGCT--TTTACATTTTCAATAGTGTCGGATGGCTCAA 29441 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | |||||| ||||| || |||| ||||| ||||||||||||||| || Sbjct 29440 CTTCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCATTATG 29388 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| || || ||||| |||||||| ||||||||||| | Sbjct 29846 CCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAG 29787 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| || ||||| || Sbjct 29786 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 29727 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| ||| || | | | ||| || ||||| | Sbjct 29726 ATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCGACT 29667 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || || || |||||||| || ||||||||||| Sbjct 29666 TCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCAT 29620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073312395250