Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2205 574 6e-159 seq1613 98.7 1e-15 >seq2205 Length=656796 Score = 574 bits (636), Expect = 6e-159 Identities = 1200/1761 (68%), Gaps = 50/1761 (3%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || || ||||| |||| |||||||||||||||||||| || | |||| | || ||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| || | ||| |||| | || || || | ||| ||||| | ||||| || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| || || || || ||||| |||||||||| ||| | || ||| | | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGA 62106 || | ||||||||| || || |||| |||||| |||| | || |||| ||||| || Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTA-TATCTTTAGGAATTGCTTCAATATTTTGAATAGA 19459 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| || || || ||| || || || |||| |||||| | || ||||| Sbjct 19460 TCCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAA 19519 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | ||| | | ||| ||||||| ||||| ||||| || ||||| |||| | || Sbjct 19520 ATCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATA 19579 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 ||| || ||| | ||||| | || |||||||||||||| ||||||||||| ||||| Sbjct 19580 AATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGC 19639 Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCT 62344 ||| ||||| || || | |||| |||||||||||| ||||| | ||||| ||| Sbjct 19640 AGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACC--ATGTTTGGCTATTTTTTCT 19697 Query 62345 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 62404 || || | |||||||||| | || | || ||| | Sbjct 19698 TTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAAT 19757 Query 62405 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 ||||| | |||||| | || | ||| |||| || || || || | ||||||||||| Sbjct 19758 ATACCTTGACTGGCAGGAC-AGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAA 19816 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 |||||||| || |||| ||| || |||||||| ||||| || || | | ||||| | Sbjct 19817 CTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 19876 Query 62524 TTGCGCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTAATCC 62580 ||| || || || | || ||| |||| || ||| || || |||||||| Sbjct 19877 AATTGCTGCCTCACTTTCGTAAGGTATACGCATTAA---AACAAATGCATCAGCTAATCC 19933 Query 62581 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62640 ||| || ||||| ||||| |||| || ||| |||| ||| ||| || ||||| | || Sbjct 19934 TTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGG 19993 Query 62641 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA-CATCCT 62699 |||||||| | ||| ||||||||||| ||||| |||| || | | | | | |||| Sbjct 19994 GTAATAATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCT 20052 Query 62700 TCAGTTTGAGAAAATCAAATC----GCCCATCTATTACAAACATGTTCAATGCAACAGAT 62755 | | |||| |||| | || | || || | |||||||| || || |||| ||| Sbjct 20053 TTAATTTGGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGAT 20111 Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 || ||||| || || || || |||| | | |||| || || |||||||| | Sbjct 20112 GCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAG 20171 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 || || || || || || || || || | ||| || || ||| | || || | ||| ||| Sbjct 20172 TTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTA 20231 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 ||||| ||| ||||||| || ||||||| || | ||| ||||| |||||||| | ||| Sbjct 20232 TAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACT 20291 Query 62936 CGAGC-----CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 62990 |||| ||| || || | ||||||| || ||| |||||| Sbjct 20292 TGAGCTCTCACTTGTTTCACGAAGCGACCCTCTTTT-----TCATATTTCTCATACAAAG 20346 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTCC-AGTCCAGGACATTCATCCGGACACATCAAC 63049 ||| || || || |||||| || | | | |||||||||||||||| || ||||| | Sbjct 20347 CTTCAAATTCCTCACCCCAA-CAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATA 20405 Query 63050 GACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 ||| ||| | || | ||| |||| |||||| || | ||||| ||||| | ||| Sbjct 20406 CTCCAATCT---TGATTGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC- 20461 Query 63107 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 ||| ||||| ||||||| | ||| || || || || |||||||| | ||| ||||| Sbjct 20462 ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAA 20521 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | ||||||| |||||| ||||| ||||||||||| | | || || | ||| || Sbjct 20522 TTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATT 20581 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||||| || |||| |||| ||| ||||| || |||||||| ||||| || | | ||| Sbjct 20582 ACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACC 20641 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 63343 ||| || |||||| || || | ||||| |||| | || | ||| | | || | Sbjct 20642 ATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACAT 20700 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 || |||||||| || || || ||||| || | || ||| |||||||||| ||||| Sbjct 20701 GA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAA 20759 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || ||||| || ||||||||| |||| | ||||| || ||| | ||| | || Sbjct 20760 ATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGT 20819 Query 63464 CTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAG 63522 |||| | || | | | ||| || ||| || || ||||| ||||||| || || || Sbjct 20820 GGAGTTGCTGC-TGAGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAG 20878 Query 63523 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63582 |||||| || | ||||| || || || | ||| ||||||| | || ||||| Sbjct 20879 ATTGTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCAT 20938 Query 63583 TAACATGTGCTGAGGTCTTTC 63603 | ||| ||||| || ||||| Sbjct 20939 GAGCATATGCTGTGGCCTTTC 20959 >seq1613 Length=46735 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||| ||| | || ||| || || | ||| ||||| | || ||||| | Sbjct 40318 CCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCT 40377 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| || || ||||| ||||| ||||| || ||||| || || ||||||| Sbjct 40378 TCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGG 40437 Query 32803 CAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTTTGAGCCCAATCGG 32859 |||| | | ||| || | ||| || | || ||||||| | ||||| || | Sbjct 40438 CAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAG 40497 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||||||| || ||||| |||| || || ||||||||||| || Sbjct 40498 CCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAG 40540 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||| ||||| || || ||||| || || ||||||||||| || ||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| ||| |||| || ||||| || || ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633608436810000