Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq2898 318 6e-82 seq2295 86.0 7e-12 >seq2898 Length=111689 Score = 318 bits (352), Expect = 6e-82 Identities = 735/1088 (68%), Gaps = 32/1088 (3%) Strand=Plus/Plus Query 51462 TCGTTCGCGATCTGCCGATAGTCGACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCG 51521 ||||| || |||| | ||||| || || |||| | |||||| |||| || || || Sbjct 27410 TCGTTGGCTATCTCTCTGTAGTCCACTACACCATCCTGCCAGGTACCTTTGACCGGGCCA 27469 Query 51522 CCGGCGACGCCGCTGAACCAGTTCGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCG 51581 ||| || || |||| ||| | ||| | ||| ||| | || | ||| || Sbjct 27470 GTGGCTACACCAGTGAATGGGTT---TCCGTCTTTGTAACCGTTGACTCCAGTCCAACCA 27526 Query 51582 CGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTCGAGAAGC 51641 || ||||||| || || || ||||| || |||| | || || ||||| | | || Sbjct 27527 CGGCCGTACATAGCTACACCAACGACAATTTTCTTAGGGCTGACTCCCTGAGCCAACAGG 27586 Query 51642 GAC--GACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACA 51699 | ||||| | | ||| || ||||| | || | ||||||||| ||| ||| || Sbjct 27587 AATTTGACACCGAA--GTCAGTTGTGTAAGTCTCCTTGGGGTTCCAGGCGGGAGCGTGCA 27644 Query 51700 GTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGA 51759 | | | |||| ||| ||| | ||| ||||| || |||||||| |||||| |||| | Sbjct 27645 GGGCAGCTTGGTGGCCAAGAGTGTCGTTTGACCAAGCTCCCTTGAAGTCGTAGCTCATCA 27704 Query 51760 GGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGT 51819 ||| |||| |||| | | ||| ||| |||||| || || ||||| || || Sbjct 27705 AGAAGATGTGGTCCATGTACTGCTGAGCCGCTTTGTAGTCTACTACCTGAATCTTGTCCC 27764 Query 51820 AGCCCGCGCTGATGGCGCTGGTCAACAGGTA---CGAACGGTTCGTGGCGGCGCTCAACT 51876 | || | ||||||||| |||| ||| | | || |||| | || || Sbjct 27765 AACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTCTTTCCAGTCTTGGCAGA---CAGCT 27821 Query 51877 CGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGG 51936 ||| ||||| || | ||| || ||| ||| ||||| | ||| || ||| | Sbjct 27822 CGTTAAGCATCTCTCTCAGTTCCTTCATCAGCTCGACGTAGATGTGACCGTC---ATCAG 27878 Query 51937 GATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTC 51996 | || || || || || ||||| || || || || ||||||||||| | ||| |||| Sbjct 27879 GGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTC 27938 Query 51997 CGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAG-GTTGCGCGT 52055 | || ||||| ||||| || || || || || || || |||||| | | | | Sbjct 27939 CATCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAGCGCTTCCTCT 27998 Query 52056 TTGCTCGCGTC-GTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGG 52114 | | | ||| ||| || |||||||| ||||| | ||| |||||||| || | || || Sbjct 27999 TAAC-CTTGTCAGTGAAG-AAGAAGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGG 28056 Query 52115 CAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTT 52174 | ||||| || ||| | ||| |||| | |||||||||||| || || ||||| Sbjct 28057 TAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTT 28116 Query 52175 GTACGGATCGTTCCAGGCCG--AGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGA 52232 ||| || |||||||||| || |||| ||||| || |||||||| || || ||||| || Sbjct 28117 GTAGGGTTCGTTCCAGGACGCCAGAC-CCTTT-TGTGGTTTCTGAAGAGCTGCCCAAGGG 28174 Query 52233 TCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAA 52292 |||||||||| || || |||||| |||||| ||| || ||||||| |||| ||| Sbjct 28175 TCGTGAATCGATACTTTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAG 28234 Query 52293 CTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAG 52352 ||| ||||| ||||| |||||||||||||| || || ||||| || || ||||| Sbjct 28235 CTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAA 28294 Query 52353 CCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAG 52412 |||||||| ||||| | || ||||| | || || | || ||||| || || | | Sbjct 28295 CCGTACAGAAGATGGGTAAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGG 28354 Query 52413 TAAACGCCCCATTCGACAAAGTAGGCCGCTTTCACGGTGCCCGACGTGTCGACGTAGGGC 52472 || |||||||||||||| ||||| || | || |||| || || | | ||||| Sbjct 28355 TAGACGCCCCATTCGACGAAGTAAGCGCCAACAACCTTGCCAGAAGTCTGCTTGAAGGGC 28414 Query 52473 AGATTGTT-TTCGCGCCACT--CGTAGT-TGAGGGCGGCCAGATGGCTACCGTCCGTGTC 52528 ||||| || | || | ||||| |||| ||| || ||||||||||| || || Sbjct 28415 ---TTGTTCCTCTCTCCGATAGAGTAGTCCAAGGGTGGCAAG-TGGCTACCGTCAGTATC 28470 Query 52529 GGCCACCA 52536 ||| |||| Sbjct 28471 GGCAACCA 28478 >seq2295 Length=223346 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 38481 GCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGC 38540 |||||||| || |||| ||| | || || || || ||| ||||||| ||||| Sbjct 101972 GCCGAGGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTATTGCGAT 102031 Query 38541 GGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTC 38600 ||||| | || |||||||| || |||| || |||| |||||||||||||||||| Sbjct 102032 GGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGCTGGTTC 102091 Query 38601 GACAGGTGCGCTTACGTGCTCACCGTCAAAGGCGCCGACTACGTTCA 38647 || | ||||| ||||||| || || ||| ||| ||||| || Sbjct 102092 GATCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACA 102138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537583207881000