Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1613 154 2e-32 seq2346 132 5e-26 seq1860 132 5e-26 seq1063 132 5e-26 seq2800 129 7e-25 seq1146 129 7e-25 >seq1613 Length=46735 Score = 154 bits (170), Expect = 2e-32 Identities = 176/235 (75%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 93110 AAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGT 93169 |||||| | |||| || |||| ||||||||||||||| || || || | || |||||| Sbjct 40315 AAACCT-CATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGC 40373 Query 93170 TTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCA 93229 ||||| | |||||| ||||| |||||||| ||||| || ||||| ||||| || || ||| Sbjct 40374 TTCTTCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCA 40433 Query 93230 AATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAA 93289 || || | ||||| || ||||| | || || || || ||||| | | ||||| Sbjct 40434 AAGGCAATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAG 40493 Query 93290 TCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || || || ||||| | ||| || || ||||| ||||| ||||| ||| | |||| Sbjct 40494 TCAGCCTTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAGGAAGTCTC 40548 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 93356 TCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCA 93415 |||| |||||||| || || | || || ||||| ||||| || ||||||||||| ||| Sbjct 40753 TCTCTAATGTATGTGTCAATGAGCAAGGAGTACATCTCAGAGTGAACATTCTCCATAGCA 40812 Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCT 93475 || |||||||||||||| ||||| ||||| || | ||||| ||||| || || | || Sbjct 40813 ATCTGGAATCCGTAGAAGCATCTGGCTTCTGTCACTTGCACCTCTTGGGAGAAGCGTTCC 40872 Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 || | || |||||||| || ||||| || || ||||| ||||||| | ||| || || Sbjct 40873 ACCAAGTTCTCATTGACAATGCCATCAGACGCAGCAAAGAAAGCCAGCACATGTTTGATG 40932 Query 93536 AAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 || ||| ||||| || || || || ||||| || || Sbjct 40933 AAGTGTCTCTCACTGTCCTTGAGATTCTCCCAGTCTGA 40970 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || ||||||||||| || || ||||| ||||| || ||||| || |||||||| ||| Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || || |||| || ||||| ||||| ||||| || |||||| ||| || | Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAAGCGGCGAGGGTTGTCTCGCAGAAGG 41537 Query 93701 GGCTCTAGTTGTGGGTCAAAC 93721 ||||| ||||||||||||| Sbjct 41538 GGCTCCTTTTGTGGGTCAAAC 41558 >seq2346 Length=621039 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 183721 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 183780 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 183781 GTGGGTTCGAACCCCACACCTGACAAA 183807 >seq1860 Length=26039 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1020 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 961 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||| Sbjct 960 TGGGTTCGAACCCCACACCTGACAAAT 934 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 4362 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 4303 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||| Sbjct 4302 TGGGTTCGAACCCCACACCTGACAAAT 4276 >seq1063 Length=61432 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 38965 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 39024 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 39025 GTGGGTTCGAACCCCACACCTGACAAA 39051 >seq2800 Length=136873 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 52201 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 52142 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 52141 GTGGGTTCGAACCCCACACCTGACA 52117 >seq1146 Length=869561 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 308536 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 308477 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 308476 GTGGGTTCGAACCCCACACCTGACA 308452 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 374175 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 374116 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 374115 GTGGGTTCGAACCCCACACCTGACA 374091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556840091739000