Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq806 100 2e-16 seq1608 96.9 3e-15 seq2295 87.8 2e-12 >seq806 Length=81131 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| || ||||| || || |||| || |||||||| || | || ||||||| Sbjct 48867 AACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCC 48808 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | ||| | || ||| ||||||| || || |||||| |||| |||| Sbjct 48807 TCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGAT 48748 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| || | || | || || ||||||||||||||| ||| | |||| || Sbjct 48747 CAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTAC 48688 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || || || ||||| || ||| | ||| ||||||| | ||||| Sbjct 48687 AATATCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGG 48638 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || ||||||||||| | ||| |||||| Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| |||||||| || |||| |||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| || || || || | ||||| ||| | ||||||| ||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||| ||||| ||||| |||||||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGT 45890 >seq1608 Length=32450 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| |||||||| ||||| |||| || ||||| || ||| | ||| || || Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | |||||| |||||| |||||||||||| ||||| ||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | || || | || || || || || ||||| | || || | || || || Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||||||||| || || | || ||||||| || ||||| Sbjct 29571 CATCCAAAAAGAATCTACGCTTCACCTTGTTCTGCGTCTCCGTGGTGG 29618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || || |||| || ||||| || ||| | ||| ||| || | Sbjct 30304 ATGCAGATTTTCGTAAAGACATTGACTGGAAAAACTATCACCCTTGAAGTGGAGCCTTCC 30363 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | ||||| ||||| ||||| ||||| ||||| || || Sbjct 30364 GATACCATTGAAAACGTAAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 30423 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| ||||| || | |||||| ||| | |||| ||||| Sbjct 30424 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACTATAAC 30483 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || || || ||||||||||| ||||| Sbjct 30484 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGG 30530 >seq2295 Length=223346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || || || ||| | || |||| || ||||| ||||| || ||||||||||| ||| Sbjct 101645 AATGGATTTTATTATCTTGGCCGCGGAGATGAAGTACGCTGTGCATTCTGCAAAGTTGAA 101704 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| | ||| | || ||||| || || ||| || ||| | || ||||||||||| Sbjct 101705 ATTATGAGATGGGTCGAAGGCGATGATCCCGCCAAGGACCATCAGCGTTGGGCGCCACAA 101764 Query 105282 TGCCCGTT 105289 ||||| || Sbjct 101765 TGCCCATT 101772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423024661495000