Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2898 158 9e-34 seq806 96.9 2e-15 seq1608 89.7 4e-13 >seq2898 Length=111689 Score = 158 bits (174), Expect = 9e-34 Identities = 336/497 (68%), Gaps = 6/497 (1%) Strand=Plus/Plus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 ||||| || || || || || || || ||||| || ||||| || || || || |||||| Sbjct 27893 GGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTC 27952 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACATTGTGC 84356 || || | || ||||| || || | || || || ||| | || ||| |||| Sbjct 27953 CAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAG-CGCTTCCTCTT--AACCTTGTCA 28009 Query 84357 ATGAA--ATAA-AACGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGG 84413 |||| | || || || || | || ||||| || || | ||| || | ||||| ||| Sbjct 28010 GTGAAGAAGAAGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAGG 28069 Query 84414 TGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTC 84473 | || | ||| ||| ||||| ||||| ||||| || || || ||||||||| Sbjct 28070 TCAGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTTC 28129 Query 84474 CAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATT 84533 || | | || |||||||| || || || | || ||||| || ||||| || | | | Sbjct 28130 CAGGACGCCAGACCCTTTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATACT 28189 Query 84534 TTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACT 84593 || || ||| | | || ||||| ||||||||||||| || ||| || || || || Sbjct 28190 TTGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTCT 28249 Query 84594 TTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGT 84653 || | | ||||| || |||| || ||||| || || ||||||||||||| | || Sbjct 28250 TTCAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGG 28309 Query 84654 GATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCA 84713 | | ||| || | ||| || ||| ||||| || || | ||| || |||||||| Sbjct 28310 GTAAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCG 28369 Query 84714 ACAAAATACGCAGCAAC 84730 || || || || |||| Sbjct 28370 ACGAAGTAAGCGCCAAC 28386 >seq806 Length=81131 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || ||||||||||| | ||| ||| || | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || |||||||| | || | | ||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || ||||| || || || ||||| | ||| | ||||||||||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| || |||||| | || || | || |||| ||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGA 45871 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || ||| | || || || ||||| |||||||| || | || |||| | Sbjct 48868 CAACATGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACC 48809 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | | |||| ||||||| ||||| || || | ||| | Sbjct 48808 CTCTGATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGA 48749 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| | ||||| || || |||||| | |||||| | ||| | |||| || Sbjct 48748 TCAACAGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTA 48689 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| |||||||| |||||||||||| | || | ||| | |||| || Sbjct 48688 CAATATCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGG 48638 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| || || ||||| || || || | ||| ||| || | Sbjct 48180 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACTATCACACTAGAAGTTGAACCCTCT 48121 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || || || ||| | || | ||||| Sbjct 48120 GACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 48061 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| || | ||||| || ||||| ||| | || ||| ||| || | ||||||||| Sbjct 48060 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAGGATGGGCGAACCTTGTCTGATTACAAT 48001 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| |||||||| ||||| | ||| |||| || || Sbjct 48000 ATTCAGAAGGAATCCACTCTTCACTTGGTACTTCGTCTACGTGGTGG 47954 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| || || || ||| | ||| | ||||||||||| | ||||| || ||||| Sbjct 46242 AAAATTCAGGACAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATCTTCGCCGGCAAG 46183 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTAC 22030 ||| | || ||| | ||| || | |||||||||||||||||||||||||| Sbjct 46182 CAATTGGAGGATGGACGAACATTGTCTGATTACAATATTCAGAAGGAATCTAC 46130 >seq1608 Length=32450 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| | ||||||||||||||||| || || |||||| | ||| | |||| | Sbjct 30419 ACCAGCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACT 30478 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || ||||||||||||||||| ||||| |||| || ||| | ||||| || Sbjct 30479 ATAACATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGG 30530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358111815178150