Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq2072 107 5e-20 >seq2072 Length=279371 Score = 107 bits (118), Expect = 5e-20 Identities = 219/323 (68%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 3160 CTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTC 3219 ||||| ||||||||| |||||| | | || ||| ||| || || | ||||| || Sbjct 16350 CTGCATACGCAAAACTTTTACGCGTTCCGATTCTTCATCTGTGAAGTGTTGAACTTCATC 16291 Query 3220 AACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTAC 3279 ||||| |||| ||||| | ||||||| | ||| | | || ||| || | |||| Sbjct 16290 AACGTGGTCGGCCAGATCTTCTTCATGGACTTCTTCTTGGACGGAGAGTTCTCCACGTAC 16231 Query 3280 GGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCATCCGAACATGACGAACCCCA 3337 || | | || | ||||| | || | ||||| || | || || ||| | Sbjct 16230 GGCAGTGACGTGGTCAGCTTCACCGAGATGGAGCCGGAA----GAGCGTGTGGA-CCCGA 16176 Query 3338 TGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCT 3397 || |||| ||||| | | | || ||||| || |||||||||||||| ||||| Sbjct 16175 TGGCTAGAGTGTTTCCTAAAGTGACCAAGTGTACCTTCCACAAATACGGTCCCTCGGGAA 16116 Query 3398 CCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCT 3457 || || | || | ||| || || ||| | || || |||| | |||||||||||||||| Sbjct 16115 CCGTGCAGAAGTTCGACGGCCTGTGCGTGCTGCCCCTGAACATTGTCAACGAGAAGATCT 16056 Query 3458 ACATTTTCCTCTGGTTCTGGTTC 3480 || | ||| | |||||||||||| Sbjct 16055 ACGTGTTCTTGTGGTTCTGGTTC 16033 Score = 86.0 bits (94), Expect = 2e-13 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCGACAATGTATTCTTCCGGTTGC 2734 |||||||||| | | ||||| |||| | ||||||||| | |||||| | | Sbjct 16838 CCGTGAAGGGGCTTCTCAAGCTCGACTCAGTGTGCATCGACAACAATGTGTTCCGGCTTC 16779 Query 2735 ATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAGT 2794 ||||| | ||||||||||||||| ||||||||||| |||| || || |||||||| | Sbjct 16778 ATTACAAAGCCACCGTGATCATCCTGATCGCGTTTTCGCTGCTCGTCACGTCGCGGCAAT 16719 Query 2795 ACTTCGG 2801 || |||| Sbjct 16718 ACATCGG 16712 Score = 86.0 bits (94), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||| ||| |||||||||||||||||||||||| | ||||| | Sbjct 131289 ACGACGCGCTCTGCATCCTGCCGCTCAACGTGGTCAACGAGAAGATCTACGTGTTCCTGT 131230 Query 3470 GGTTCTGGTTCTACGTGCTAGCCATCATCA 3499 ||||||||||| | | || | |||| ||| Sbjct 131229 GGTTCTGGTTCGTCATCCTCGGCATCCTCA 131200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479593912500