Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2898 172 5e-38 seq1608 140 3e-28 seq806 109 5e-19 seq2205 89.7 4e-13 >seq2898 Length=111689 Score = 172 bits (190), Expect = 5e-38 Identities = 340/495 (69%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 20446 GCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTT 20505 || || || || ||||||||||| || || || | || ||||||||| |||||| | Sbjct 28380 GCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATC 28321 Query 20506 CCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAAC 20565 || ||| | | ||||| || || || || | ||||| ||||| |||||||| |||||| Sbjct 28320 CCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAAC 28261 Query 20566 GACGCGTT-AAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGG 20624 ||| || |||| || || | || | |||| ||||||| || ||| || Sbjct 28260 GACAGTTTGAAAGAAATCGAAGGC----AGCTTCCAAGCTCTGCAACGATCCTGCAGTGG 28205 Query 20625 CCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAA 20684 | | || | || ||||| | || ||||| |||||||| ||||| |||||||||||||| Sbjct 28204 CAGGGAGGACTTCAAAGTATCGATTCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAA 28145 Query 20685 AGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAA 20744 || | | || ||||||||||| ||||| || || || || ||| ||||| ||| Sbjct 28144 GGGTCTGGCGTCCTGGAACGAACCCTACAAGGGTAATTTCGGACAGCTGATGATGTTGAA 28085 Query 20745 ACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCC 20804 || ||| ||| | || || | ||||||| | || || ||||| | | ||||| Sbjct 28084 ACAGGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGTTGGACCCTGGCTGATCC 28025 Query 20805 GTTTTATCATATGCAC-GATCCGATCGTACG-CCAAG-TTTTCATCGATTCTGTGGAAGA 20861 || | || | | ||| || | | || | ||| ||| | || |||||| | || Sbjct 28024 ATTCT-TCTTCTTCACTGA--CAAGGTTAAGAGGAAGCGCTTCGTTGACTCTGTGAAGGA 27968 Query 20862 GTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGG 20921 || | || |||||||||||||| || || ||||| ||||||||||| || || || Sbjct 27967 CTTCCTTGAAACCTGGAAATTCTTTGATGGAGTGGACATTGACTGGGAGTTCCCTGGTGG 27908 Query 20922 CAAAGGTGCGAATCC 20936 || || || || || Sbjct 27907 TAAGGGCGCTAACCC 27893 >seq1608 Length=32450 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | || | ||||||||||||||| |||||||| || Sbjct 29621 ATACCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCA 29562 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||| | || || |||||| |||| || ||||| || || || Sbjct 29561 GACAGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGG 29502 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||| || ||||| | ||||| ||||||| | || Sbjct 29501 GGAATGCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCA 29442 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || |||| ||||| |||||||||||||| Sbjct 29441 ACTTCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCAT 29392 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | |||||| ||||| | || || ||||| ||||||||||| || Sbjct 31445 ATACCACCTCGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCA 31386 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| ||||| |||||| |||| |||||||| ||||| || Sbjct 31385 GAAAGGGTACGCCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGG 31326 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | ||| | ||| || | | ||| Sbjct 31325 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCG 31266 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || |||| || || || ||||||||||| Sbjct 31265 ACTTCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31216 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | |||||| ||||| | || || ||||| ||||||||||| || Sbjct 30305 ATACCACCACGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCA 30246 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||||||| ||||| || ||| |||| |||||||| ||||| || Sbjct 30245 GAAAGAGTGCGTCCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 30186 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | ||| | ||| || | | ||| Sbjct 30185 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGTTCA 30126 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || || || || || ||||| ||||| Sbjct 30125 ACTTCTAGGGTGATGGTTTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 30076 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | ||| || || || | |||||||| || |||||||| || ||| Sbjct 30533 ATACCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCG 30474 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||||||| || || ||||| |||| |||||||| ||||| || Sbjct 30473 GAAAGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGG 30414 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || |||| | ||||| ||| |||| | || Sbjct 30413 GGAATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCC 30354 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || |||| || ||||| ||||||||||| Sbjct 30353 ACTTCAAGGGTGATAGTTTTTCCAGTCAATGTCTTTACGAAAATCTGCAT 30304 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || || || | ||||||||||| || ||||||||||| Sbjct 30761 ATACCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCA 30702 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || || ||||| |||| |||||||| ||||| || Sbjct 30701 GAAAGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGG 30642 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || ||||| || |||||| ||| | | |||| ||||| | | || Sbjct 30641 GGAATTCCCTCTTTATCTTGAATCTTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCC 30582 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || || || || ||||||||||| Sbjct 30581 ACTTCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 30532 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | |||||| ||||| | ||||| ||||| ||||||||||| || Sbjct 31217 ATACCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 31158 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| |||||| || || || || ||| |||| |||||||| ||||| || Sbjct 31157 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 31098 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| |||| | |||| ||||| | | || Sbjct 31097 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCC 31038 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || || || || ||||| ||||| Sbjct 31037 ACTTCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | ||| || || || | |||||||| || |||||||| || ||| Sbjct 30077 ATACCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCG 30018 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || || || ||| |||| |||||||| ||||| || Sbjct 30017 GAAAGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCTGGG 29958 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||||| |||| | |||| ||||| | | || Sbjct 29957 GGAATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCA 29898 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || |||| || || || ||||||||||| Sbjct 29897 ACTTCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 29848 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || |||||||| || | ||| || |||||| || || || ||| Sbjct 31640 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCA 31581 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| || ||||| ||||| ||||| || ||| | || Sbjct 31580 GCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGAT-TTTAGCCTT 31522 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | ||| | ||| || | | ||||| || | ||| | ||||| || |||| || Sbjct 31521 AACGTTTTCGATGGTATCAGATGGCTCGACTTCGAGGGTGATAGTTTTTCCAGTCAAGGT 31462 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 31461 CTTCACGAAAATCTGCAT 31444 >seq806 Length=81131 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | ||||| || || || || ||||| ||| Sbjct 48635 ATACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 48694 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | |||||| || ||| |||| | | |||||| || ||| Sbjct 48695 GAAAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 48754 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| || || ||| ||||| |||| | | ||||| ||| || | || ||| Sbjct 48755 GGAATGCCTTCCTTATCTTGAAT-TTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTC 48813 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || |||| ||| || ||||| ||||||||| Sbjct 48814 CACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 48865 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | || || || | || ||||| || ||||| |||||||| Sbjct 47951 ATACCACCACGTAGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCA 48010 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | ||| || || ||| |||| | ||||||||||| || Sbjct 48011 GACAAGGTTCGCCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGG 48070 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | ||||| ||||| | || ||| Sbjct 48071 GGAATACCTTCCTTGTCCTGAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCA 48130 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||| |||||| || || || ||||| Sbjct 48131 ACTTCTAGTGTGATAGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 >seq2205 Length=656796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| | | | ||| || |||||| | |||||||| Sbjct 562482 GTGGATTCCTTCTGAATGTTGTAGTTTGTGAGAGTGCGGCCATCTTCCAACTGTTTACCG 562423 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| ||||| || ||||| || || |||| |||||||| ||||||| || Sbjct 562422 GCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCTCTCTTTGTCCTGAATCTTTGCCTTC 562363 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || || | || | || || || ||||| ||| Sbjct 562362 ACATTCTCAATAGTGTCTGAAGCCTCCACTTCGAGGGCGATAGTCTTACCCGTCAGGGTT 562303 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| || || ||||| Sbjct 562302 TTTACGAAGATTTGCAT 562286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119166845700