Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1613 96.9 7e-15 >seq1613 Length=46735 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/181 (73%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| | | ||||| ||||| || || ||||| ||||| |||||||||||| || Sbjct 40934 TTCATCAAACATGTGCTGGCTTTCTTTGCTGCGTCTGATGGCATTGTCAATGAGAACTTG 40875 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCA-GT-ACTTTGAGGCGCGCTGCTTCTACGGCTTCC 42525 | | ||| |||||||||| || || || || | ||||||||||| |||| Sbjct 40874 GTGGAACGCTTCTCCCAAGAGGTGCAAGTGACA--GAAGCCAGATGCTTCTACGGATTCC 40817 Query 42526 AGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACA 42582 |||| || || ||||| || ||||||||| ||||| || |||||| |||| |||| Sbjct 40816 AGATTGCTATGGAGAATGTTCACTCTGAGATGTACTCC---TTGCTCATTGACACATACA 40760 Query 42583 T 42583 | Sbjct 40759 T 40759 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | ||||| || ||||| ||| | | ||| | ||| ||||| Sbjct 39521 AGGGCCTACACACAGACTTCGCGTGCCTGATGTACAAG---CACGTGGTGCAGAAGCCGA 39465 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 ||||| || || | | ||||||| ||| ||||||| |||||| |||||||||| | Sbjct 39464 GCAAGGATCGCGTGCTGCATATCATCAAGGATGCCGTGGTCATCGAGCAGGAGTTCCTGA 39405 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 || | | |||||||| ||| ||||||||||| ||| || |||| | ||||| Sbjct 39404 CGGACGCCCTGCCCGTCAGGCTGCTCGGCATGAACTGCGAGCTTATGTCTGACTACATTG 39345 Query 43009 AGTACGTCGCCGA 43021 ||| ||||||||| Sbjct 39344 AGTTCGTCGCCGA 39332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944304082386000