Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1608 95.1 1e-14 seq2205 91.5 1e-13 seq2295 87.8 1e-12 seq806 82.4 6e-11 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| ||||| ||||| ||||| ||| ||||| ||||||||||| || | Sbjct 29847 ACCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGA 29788 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || |||| |||||||||||||| ||||| | ||||| || || Sbjct 29787 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGG 29728 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | |||||||| ||||||| ||||| ||| | | |||| | || ||| Sbjct 29727 GATACCTTCTTTGTCTTGAATTTTTGCCTTAA-CATTCTCGATAGTATCTGAAGGCTCGA 29669 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || ||||| || || || || ||||| || || || ||||| Sbjct 29668 CTTCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCAT 29620 >seq2205 Length=656796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||||| ||||| | || || ||| |||||||| |||||||| |||| Sbjct 548976 ACCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGA 548917 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || | || ||||| || || ||||| || || || || ||||| || ||| Sbjct 548916 GAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGG 548857 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTC 34076 | || |||||||||| ||| ||| ||| | | || || || || | || || Sbjct 548856 GATGCCCTCTTTGTCCTGAATCTTTGCCTTCA---CATTCTCAATAGTGTCCGAAGCCTC 548800 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 |||| || || || || || || || ||||| || |||||||||||| Sbjct 548799 CACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATT 548748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||||||||| ||||||| ||||| ||| ||||| || ||||| || |||| Sbjct 546110 ACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGA 546169 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || ||||| || || ||||| || || || || ||||| || || Sbjct 546170 AAGAGTG-CGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCG 546228 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATT 34075 | | || |||||||||| |||||| ||| | | || || || || | || | Sbjct 546229 GAATGCCCTCTTTGTCCTGGATTTTTGCCTTTA---CATTCTCAATAGTGTCTGAAGCCT 546285 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | |||| || || || || || || || ||||| || ||||| |||||| Sbjct 546286 CCACCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATT 546338 >seq2295 Length=223346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10212 CACATAGGCGCAGCGACTAAACCAAAACGCGTGTTGTTCCCACGCCACATCGTCATCTTG 10271 ||| |||||||||||| ||||| |||||| |||||||| | ||| || |||| || Sbjct 102109 CACGTAGGCGCAGCGATCGAACCAGCGCGCGTGCTGTTCCCAGGGCACGTCATCATTTTC 102050 Query 10272 CCAATGATTTAATCCGCCGTTGCAATGAAAACATTTAGTCTTATCACCCTCGCCCACATA 10331 ||| | || || ||||| | ||||| ||||| || |||||||| |||| || || Sbjct 102049 CCAGTCTTTCAAACCGCCATCGCAATAGAAACACTTGGTCTTATCCCCCTGACCGGTGTA 101990 Query 10332 ATAAAATCCCGCATCTGCTAGTTCCTCGGGCTT 10364 | || || || || || |||||||| || || Sbjct 101989 GAAGAAACCAGCCTCGGCAAGTTCCTCTGGTTT 101957 >seq806 Length=81131 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || |||||||| |||||||| || ||||||||| || ||||| || | Sbjct 48637 ACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 48696 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || |||||||| || ||||| || |||| | ||| ||||| | Sbjct 48697 AAGAGTG-CGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAG 48755 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCG 34077 | | || || || || ||||||| |||| | | ||| |||||| | ||| Sbjct 48756 GAATGCCTTCCTTATCTTGAATTTTT-GCTTTAACGTTTTCAATGGTATCAGAGGGTTCC 48814 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||||| ||||| || || | || ||||||||||| ||||| || Sbjct 48815 ACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 48867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397048003385950