Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1608 165 2e-35 seq806 149 1e-30 seq2205 127 5e-24 seq1404 95.1 3e-14 >seq1608 Length=32450 Score = 165 bits (182), Expect = 2e-35 Identities = 180/238 (76%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||| |||||||||||| || ||||| | Sbjct 29618 CCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 29559 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||||||||| || ||||| ||||||||||| ||||| ||| |||||| Sbjct 29558 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGA---TCTGGG 29502 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || || ||||| ||||| || ||||| |||| ||| | || Sbjct 29501 GGAATGCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCA 29442 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 ||||| || ||||| || || || |||| || || || || |||||||||||| ||| Sbjct 29441 ACTTCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCATTATGATAT 29384 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || |||||||||| || || || || ||||| | || || || ||||| Sbjct 30039 TTCCTTCTGAATGTTATAGTCGGAAAGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAA 29980 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| |||||||| || |||||| ||||| || ||||||||||| || || || || Sbjct 29979 GATTAGACGCTGCTGG---TCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTTAC 29923 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || | || ||||| || ||||| || || || |||| ||||| Sbjct 29922 ATTCTCAATAGTGTCAGAAGGCTCAACTTCAAGAGTGATGGTTTTTCCAGTCAATGTCTT 29863 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 29862 CACGAAAATCTGCAT 29848 >seq806 Length=81131 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || |||||||||| || || || |||||||| ||||||| Sbjct 48638 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 48697 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| ||||||||||| |||||||||| | ||||||| || Sbjct 48698 AGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGA 48757 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| ||||| |||||||| || | ||| | ||| || Sbjct 48758 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACC 48817 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || ||||| |||| |||||| || || |||||||| Sbjct 48818 TCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 48864 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | || | || || || ||||||||||| || | Sbjct 48182 CCACCACGCAGACGAAGTACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCAGAA 48241 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || ||||| ||||| |||||||||||||| ||||| || |||||| Sbjct 48242 AGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTG---GTCTGGG 48298 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| |||||||| ||||| ||||| || ||||| || | || || || Sbjct 48299 GGAATACCTTCCTTATCCTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCA 48358 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || || || || || | ||| || |||||||| |||||| Sbjct 48359 ACTTCTAAAGTTATTGTTTTACCAGTTAAAGTTTTTACGAATATTTGCATT 48409 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| ||||| | | |||||||| ||||| || ||||| || || || Sbjct 48445 TTCTTTTTGGATATTGTAGTCTGATAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAA 48504 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || ||| | |||||| || || |||||||||||||| ||||| || || Sbjct 48505 GATCAATCGTTGCTGATCAGGTGGGATACCCTCCTTATCCTGGATTTTGGCTTTAACATT 48564 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | || || || | ||||| || || || |||| || || || Sbjct 48565 TTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTAC 48624 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 48625 GAAAATTTGCAT 48636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | | || || || | ||||| || ||| ||||| ||||| || Sbjct 45866 TACAT-TCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTA 45924 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 |||| || |||||||||||||| | || || || ||||| |||| | |||||| Sbjct 45925 ATCGGAAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATC 45984 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| ||||| ||||| || || ||||| ||||| || ||||| || | || | Sbjct 45985 TGGTGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGG 46044 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | || || || || || || | ||| || || || || ||||| Sbjct 46045 TTCAACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 >seq2205 Length=656796 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| |||||||| | || ||||| || ||||| || ||| Sbjct 546135 TGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAAAGAGTGCGGCCATCTTCCAACTGT 546194 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || |||||||| ||||| || || ||||| || || ||||| ||||||||| Sbjct 546195 TTACCGGCGAAGATAAGACGTTGCTGG---TCTGGCGGAATGCCCTCTTTGTCCTGGATT 546251 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || || || |||| || | || || ||||| ||||| ||||| || Sbjct 546252 TTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTCTTACCC 546311 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || ||||| ||||||||| Sbjct 546312 GTCAGGGTTTTTACGAAGATCTGCATT 546338 >seq1404 Length=44454 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || ||||||||||| || |||||||| ||||| |||| |||| | || Sbjct 42086 GGGATTCCCTCCTTATCCTGGATCTTGGCTTTCACATTTTCGATAGTATCGGAGGGCTCG 42027 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 42026 ACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACGAAAATCTGCAT 41977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179609434892050