Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq547 89.7 4e-13 seq840 87.8 1e-12 seq1794 82.4 6e-11 >seq547 Length=938836 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 108769 TACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGAC 108828 ||||| ||| ||| || | |||||||| ||||| || || || |||| || || ||| Sbjct 260352 TACGCGTTCATCCTAAATGTGACGTGGCTCGTCAACTCTGCCGCTCACAAGTGGGGAGAC 260293 Query 108829 CGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTC 108888 || | ||||||| |||| || |||||| | ||| || ||| |||||| Sbjct 260292 AAGCCCTATGACAAGAGCATTAAGCCTTCCGAAAACTTGTCGGTCGCCATGTTCGCTCTC 260233 Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 || || |||| ||||||||||||||| ||||| | |||||||| | || ||| || Sbjct 260232 GGAGAAGGATTCCACAACTACCACCACACTTTCCCTTGGGACTACAAAACTGCTGAGCTG 260173 Query 108949 GGGAACGAC 108957 || ||| || Sbjct 260172 GGCAACAAC 260164 >seq840 Length=92065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||| | ||| ||||| |||||||||||| | |||||| ||| |||||||| ||||| Sbjct 87245 TGGGTCCGCGACCACAGACTTCACCACAAGTTCAGTGACACAGAC-GCCGACCCTCACAA 87303 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 || ||| | || |||| ||||| ||| | || ||||||||||||| ||| || Sbjct 87304 TGCGAACCGAGGCTTCTTCTTCTCACACATCGGCTGGCTCATGATGAAGAAGAAC 87358 >seq1794 Length=31895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 |||||| || ||| || ||||| | || ||||| |||||||||||| | |||||| Sbjct 1974 ACAGAATACTATCTATCAATGGGTCCGTGACCACAGACTTCACCACAAGTTCAGTGACAC 1915 Query 108507 -GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCA 108565 |||| |||| || ||||| || ||| | || |||| ||||| || | || ||||||| Sbjct 1914 TGACG-CCGATCCCCACAATGCGAACCGAGGCTTCTTCTTCTCACATATCGGCTGGCTCA 1856 Query 108566 TGATGACCAAGGAC 108579 |||||| ||| || Sbjct 1855 TGATGAAGAAGAAC 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381758957753400