Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq806 158 9e-34 seq1608 127 1e-24 >seq806 Length=81131 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| |||| |||||||||||| || || || ||||| || ||||||||| Sbjct 45872 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 45931 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| | || || |||||| | ||||| | ||||| || |||| Sbjct 45932 AGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 45991 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || ||||| ||||||| ||| ||| |||| || || || ||| || Sbjct 45992 ATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACT 46051 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||||||||||||| || | |||||| |||||||||||||| Sbjct 46052 TCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 125 bits (138), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| | || ||||| ||||||||||| |||||||| || ||||| || || Sbjct 48410 CCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTC--TG 48467 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| || |||||||| || | ||||| || || || || || Sbjct 48468 ATAATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTG 48527 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || ||||| || |||||| ||| ||| |||| || || || | || | Sbjct 48528 GGATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAA 48587 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || |||||||| || |||| |||||||| |||||||||||| Sbjct 48588 CCTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCATA 48637 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 || || ||||| || || || || || || |||||||| || || ||| | | || | Sbjct 47972 ACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCA--GACAAGGTTCGCCCATCCT 48029 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| ||||| ||| | ||||| ||||||||||| ||||| ||||||||||| Sbjct 48030 CCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATACCTTCCTTGTCCT 48089 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| ||| |||| || || || ||| || |||| || || || | Sbjct 48090 GAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACTTCTAGTGTGATAGTCT 48149 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| |||||| || || ||||||||| Sbjct 48150 TGCCAGTCAAAGTTTTGACGAAGATTTGCATA 48181 >seq1608 Length=32450 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | ||||| || ||||||||||| || || || ||||| || ||| Sbjct 30986 CCACCACGCAGACGCAAAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30927 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||||| | || || |||||| | || | |||||| ||||| ||| Sbjct 30926 AGGGTACGCCCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 30867 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| |||| || ||||| ||| || Sbjct 30866 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGATGGTTCAACT 30807 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| ||||||||||| || || || || || |||||||||||| Sbjct 30806 TCTAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATA 30759 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | ||||| ||||| || || || ||||| || |||||||| || Sbjct 30302 CCACCACGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 30243 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | |||||||| ||| | || | |||||| ||||| ||| Sbjct 30242 AGAGTGCGTCCATCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 30183 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| |||| || ||||| | ||| || Sbjct 30182 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGTTCAACT 30123 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| |||||||| || || || || || || |||||||||||| Sbjct 30122 TCTAGGGTGATGGTTTTTCCAGTGAGGGTCTTCACGAAAATTTGCATA 30075 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | || || || ||||||||||| || || || ||||| || ||| Sbjct 30530 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30471 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || |||||||| | || | |||||| ||||| ||| Sbjct 30470 AGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 30411 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||||| ||||| |||| || |||||| | || || Sbjct 30410 ATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACT 30351 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || ||||| || |||| || ||||| ||||| |||||| Sbjct 30350 TCAAGGGTGATAGTTTTTCCAGTCAATGTCTTTACGAAAATCTGCATA 30303 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | ||||| ||||| || || || ||||| || |||||||| || Sbjct 31442 CCACCTCGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 31383 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||||| | |||||||||||| | || | |||||| ||||| ||| Sbjct 31382 AGGGTACGCCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31323 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| |||| || ||||| | || || Sbjct 31322 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCGACT 31263 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || ||||| || |||| || || || ||||| |||||| Sbjct 31262 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATA 31215 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | ||||| ||||| | ||||| ||||| || |||||||| || Sbjct 31214 CCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 31155 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || ||||| ||| | || | |||||| ||||| ||| Sbjct 31154 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31095 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| || ||| |||||| | || ||||| || | || || Sbjct 31094 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 31035 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || |||||||| || || || || || |||||||||||| Sbjct 31034 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATA 30987 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | || || ||||||||||| ||||| || ||||||||||| Sbjct 30758 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 30699 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||||| | || |||||||| | || | |||||| ||||| ||| Sbjct 30698 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 30639 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || ||| || ||| ||| | || ||||| || | || || Sbjct 30638 ATTCCCTCTTTATCTTGAATCTTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCCACT 30579 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||||||||| || || || || || ||||| |||||| Sbjct 30578 TCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCATA 30531 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | || || || ||||||||||| || || || ||||| || ||| Sbjct 30074 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30015 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||||| | || ||||| ||| | || | |||||| ||||| ||| Sbjct 30014 AGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCTGGGGGA 29955 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || || ||| |||||| | || ||||| || | || || Sbjct 29954 ATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACT 29895 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || |||||||| || |||| || || || ||||| |||||| Sbjct 29894 TCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 29847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || || || ||||| ||||| || |||||||| || Sbjct 31672 TGCCACCACGCAGACGGAGTACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAG 31613 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| | || ||||||||| | || | |||||| ||||| | Sbjct 31612 AAAGAGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGG 31553 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| ||||| || || |||| || ||||| || | Sbjct 31552 GAATTCCTTCCTTGTCTTGGATTTTAGCCTTAACGTTTTCGATGGTATCAGATGGCTCGA 31493 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| || ||||| || |||| || || || ||||| |||||| Sbjct 31492 CTTCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATA 31443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357379041747875