Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq806 104 2e-17 seq2205 95.1 8e-15 >seq806 Length=81131 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| |||||||| || | ||| || || || ||||||||||| | Sbjct 48182 CCACCACGCAGACGAAGTACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCAGAA 48241 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || || ||||| || | || || | |||||||| || | ||| Sbjct 48242 AGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGGGGA 48301 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||||| ||| | | | | |||||| | || || Sbjct 48302 ATACCTTCCTTATCCTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCAACT 48361 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct 48362 TCTAAAGTTATTGTTTTACCAGTTAAAGTTTTTACGAATATTTGCAT 48408 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | |||||| || | ||| | ||| || || || ||||| || |||| Sbjct 48638 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 48697 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| ||||||||||| ||| | || || || | ||| ||||| | || Sbjct 48698 AGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGA 48757 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| || || |||||| ||||| | | | || || | | |||||| Sbjct 48758 ATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACC 48817 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGT 39724 || || || || ||||| ||||| ||||| || || ||||||||||||| || Sbjct 48818 TCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTTGT 48869 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||||| ||| || || | || ||||||||| ||||| || || | Sbjct 48410 CCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAT 48469 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| |||| ||||| ||||| ||| |||| || || || |||||||| | || Sbjct 48470 AATGTGCGTCCATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGG 48529 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || || || ||||| ||||| | | | |||||| | || || Sbjct 48530 ATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACC 48589 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||| || || || ||||||||||| || ||||| Sbjct 48590 TCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCAT 48636 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550 || |||| ||| | || || ||||| ||||| | ||| ||||| ||||| ||||||| Sbjct 45872 CCACCTCTCAACCTTAGAACTAAATG--AAGTGTTGATTCCTTTTGAATATTGTAATCGG 45929 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | |||| | || || | || || || | ||||| || | || ||||| | | Sbjct 45930 AAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTG 45989 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | || |||||||| ||||| ||| | | | | |||||| | | ||| | Sbjct 45990 GAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAA 46049 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 | || || ||||| |||||||| ||||||||||| || || || |||||| || Sbjct 46050 CTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATGCCG 46102 >seq2205 Length=656796 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | |||| ||| ||||| || ||||| || | | | ||| |||| Sbjct 546126 AGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAAAGAGTGCGGCCATCT 546185 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||| ||||| ||| | || || | ||| ||||| || | || | ||| |||||||| Sbjct 546186 TCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGAATGCCCTCTTTGTCC 546245 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 |||||| || | || | | ||||||| ||||| || | || || || Sbjct 546246 TGGATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTC 546305 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| | |||||||||||||||||||| Sbjct 546306 TTACCCGTCAGGGTTTTTACGAAGATCTGCAT 546337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347357005138175