Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2205 147 3e-30 >seq2205 Length=656796 Score = 147 bits (162), Expect = 3e-30 Identities = 827/1303 (63%), Gaps = 32/1303 (2%) Strand=Plus/Minus Query 111711 CACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTC 111770 || |||| ||||| || ||| || | || ||| |||| ||| | || || || Sbjct 20854 CATGCAAGTCCAACTCTTTTCTCAGCAGCAACTCCACGACCACAATTATCTTCATGCTTT 20795 Query 111771 CTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCC 111830 ||||| |||| | ||| ||| || | || ||||| | ||| | | |||||||| Sbjct 20794 CTTATAGCAATGAGGGATGATAGCATTGAGGGAATTTATGACACGTTAAAACAATGTGCC 20735 Query 111831 CAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG 111890 | || || |||| |||||||| || || | || | || | ||||| || Sbjct 20734 CTCATTTCTAAGTCAGCTGGTGGGATAGGTCTTCATGTACACTGCATTAGAGCAAAGGGA 20675 Query 111891 TCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTT 111950 || ||| |||||||||||| || ||||| | | || ||| | | || | Sbjct 20674 ACTTATATAGCTGGTACAAATGGTGTCTCTAATGGTCTAGTACCCATGTTAAGAGTTTAC 20615 Query 111951 AACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGTC--- 112007 ||| ||| || || |||||| |||||| || | || || | |||| | Sbjct 20614 AACAACACTGCTCGATATGTAGACCAAGGAGGTAAT---AAAAGACCCGGCGCATTTGCC 20558 Query 112008 -TAT-CTT-GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 112064 ||| ||| || |||||||| || ||||| | || |||||||| ||| ||| Sbjct 20557 ATATACTTAGAACCATGGCATGCTGATATATTTGAATTCCTTGATTTGAAAAAGAACACT 20498 Query 112065 GGTGATGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 || | || || | || |||| | || || |||| ||| | ||||| || || | || Sbjct 20497 GGGAAAGAAGAAGTCCG-TGCCAGAGAGCTATTCTATGCTTTATGGATACCTGACTTGTT 20439 Query 112124 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGG 112183 |||||| ||||| || | | ||||| | || | || || | | || || Sbjct 20438 CATGAAAAGAGTAGAAAGCAATCAAGATTGGAGTATCATGTGCCCCCATGAATGTCCTGG 20379 Query 112184 TCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAA 112242 || | || || | ||||||||| |||||||| | || || || || |||| Sbjct 20378 ACTAGCAGACTGTTG-GGGTGAGGAATTTGAAGCTTTGTATGAGAAATATGAAAAAGAGG 20320 Query 112243 GTCGGG-CGACTGCGACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCA 112300 |||| || || || ||| |||| | | | |||||||||||| || | | || Sbjct 20319 GTCGCTTCG--TGAAACAAGTGAGAGCTCAAGTTCTTTGGAAAGCTATTATCGAAGCACA 20262 Query 112301 AACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCA 112360 | || || || || ||||| |||||||| ||||| | || || ||| || || || Sbjct 20261 AGTTGAAACAGGAACTCCATACATGCTTTATAAAGATTCATGCAATAGAAAAAGCAACCA 20202 Query 112361 AAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGA 112420 |||||| |||||| || || | |||| | || || ||||| | |||| || Sbjct 20201 AAAGAACTTGGGTACTATTAAATGCAGCAACTTGTGCACTGAAATTGTAGAATACACCTC 20142 Query 112421 CAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCC 112480 |||||| ||||||||| || || |||||||| ||| | | || |||| || Sbjct 20141 ATCAGATGAAGTGGCTGTGTGCAATCTAGCATCAATTGCTTTAAATATGTTTGTGAAT-G 20083 Query 112481 AGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAA 112540 || |||||| |||| | ||| ||| | | |||||||| || ||| | || | || Sbjct 20082 AG-GACAAA-ACATATAATTTCACCAAATTAAAGGAAGTTACTAAGACTATAACTCAGAA 20025 Query 112541 CCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATA 112599 ||||| | | |||||||| ||||| |||||| || ||| || || || |||| Sbjct 20024 TCTAAATAAAATTATTGATGTAAATTATTACCCAGTGCCAGA-GGCAAAAAACTCAAATA 19966 Query 112600 TGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTC 112659 |||| ||||| || || || | || |||||||| | || |||| ||| || | | Sbjct 19965 TGAGGCACCGACCCATCGGAATTGGAGTCCAAGGATTAGCTGATGCATTTGTTTTAATGC 19906 Query 112660 GCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGT 112719 | | | || || | ||| | || | ||| | |||||||| ||||| | Sbjct 19905 GTATACCTTACGAAAGTGAGGCAGCAATTAAATTAAATCAACAAATATTTGAAACAATTT 19846 Query 112720 ATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCT 112779 || | | || || || || |||| ||||| || ||| |||| ||||| || | Sbjct 19845 ATTATGGGGCACTAGAAGCCAGTTGTGAGTTAGCTGAGAAGTATGGCGTCTATGAGACTT 19786 Query 112780 TTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC-- 112837 ||| || | ||| || ||||| | | |||| |||||||||| | | | || Sbjct 19785 ATGAAGGCTGTCCTGCCAGTCAAGGTATATTGCAATATGATATGTGGAA---TAAAACCC 19729 Query 112838 ---CAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 || ||| | | |||| | ||||| ||| || | | |||||| | Sbjct 19728 CCACAGACTT--GTGGAATTGGGTGTCACTCAAAGAAAAAATAGCCAAACATGGTCTTAG 19671 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954 || || || | || ||||||||||| || ||||| || ||||| ||||| ||||| Sbjct 19670 AAATTCCCTATTATTAGCTCCAATGCCAACTGCATCCACTGCTCAAATATTGGGAAATAA 19611 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 ||||| |||||||| | || | ||||| |||| ||| || Sbjct 19610 TGAATCATTTGAACCATTTACTTCCAACATTTATCAAAGACGA 19568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719316142000