Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2205 150 2e-31 >seq2205 Length=656796 Score = 150 bits (166), Expect = 2e-31 Identities = 478/727 (66%), Gaps = 17/727 (2%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 || ||| |||| ||||| | || | |||||||| |||||||||| ||||| ||||| Sbjct 19568 TCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTG 19627 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 || ||||| || ||||||||||| || | || || || | |||||| | || Sbjct 19628 AGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACCATGTTTGGC 19687 Query 106045 GATGCGTTCCTTGAGA-ACATCCCAGTCGT--AGT-TGAGCTTGGTTTCACCTTCCCACA 106100 || ||| ||||| ||| || | || ||| || | ||||| | | ||||| Sbjct 19688 TATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG-GGTTTTA---TTCCACA 19743 Query 106101 TATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTT 106160 ||||| |||| | | ||||| | ||| | || ||| | ||||||||| || | Sbjct 19744 TATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATAAGTCTCATAGACGCCAT 19803 Query 106161 GGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATAC 106220 ||||| || ||||| || || || || | | | ||| || |||||||| || Sbjct 19804 ACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTT 19863 Query 106221 GAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC-AAAATAAATACA 106279 | ||| | | | ||| | || || | | ||| ||| |||| |||| || Sbjct 19864 GTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAG-GTATACGCATTAAAACAAATGCA 19922 Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || | ||||| || || | || || |||| ||| | |||||| || ||| || Sbjct 19923 TCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCC 19982 Query 106340 GTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 106398 ||| || || ||| ||||| ||||| | | |||||||| | || | | |||| Sbjct 19983 -TCTGGCACTGGGTAATAATTTACATCAATAATTTTATTTAGATTCTGAGTTATAGTCTT 20041 Query 106399 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 106458 || | ||| | | ||| ||| | | || | || ||||| ||| || | Sbjct 20042 AGTAACTTCCTTTAATTTGGTGAAATTATATGTTT---TGTCCTCATTCACAAACATATT 20098 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-TGTACTCTAAAA 106517 | || |||||||| | |||||| |||||| ||||| | || | |||| |||| || Sbjct 20099 TAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATC-TGATGAGGTGTATTCTACAA 20157 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 |||| || ||||||||| | ||||| || ||||| ||||||||||| || ||| | | Sbjct 20158 TTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTAT 20217 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 |||| | ||| || || |||||||| || || || || || |||| | || ||| | Sbjct 20218 TGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAG 20277 Query 106638 CCTTCCA 106644 | ||||| Sbjct 20278 CTTTCCA 20284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958860089000