Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2205 509 2e-139 seq2446 113 5e-20 seq1613 91.5 2e-13 >seq2205 Length=656796 Score = 509 bits (564), Expect = 2e-139 Identities = 1188/1782 (67%), Gaps = 30/1782 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || ||||| |||| || | ||| |||| || || |||||||| ||||| || Sbjct 19190 TTTGTCAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCC 19249 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || ||||| || | |||| |||||||||| ||| || |||||| |||| | || Sbjct 19250 CGTTTTTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGG 19309 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | || ||||||||| | ||||| ||||||||||||||||| ||||| ||||| || Sbjct 19310 TTCAGCAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGC 19369 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | || | || | | ||||| || |||||||| | | | || || Sbjct 19370 CATTTGTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATC 19429 Query 47213 TTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 || || | | || | |||||||||||||||| || | || || ||||| | Sbjct 19430 TTTAGGAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCAT 19489 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || | ||| | | ||||||||| | ||| | |||| ||||||||| ||| Sbjct 19490 ATCTTCATCCCATAAATCAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTTG 19549 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||||| || || | |||| | ||| || || ||| ||||||| | ||||| Sbjct 19550 GAATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATTC 19609 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||||||||| || ||||||||||| ||||| || ||||| | || | ||||| | ||| Sbjct 19610 ATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATT 19669 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 ||| | |||| ||| ||| | ||||| ||| | |||| || Sbjct 19670 TCTAAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG 19729 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 |||||| | ||||||||| | || |||| ||| ||| | || | ||| || Sbjct 19730 GGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATAAGT 19789 Query 47570 TTTATAAGGACCGTATAGTTT--AGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 | ||| ||| ||| || ||| | |||||||| ||||| | ||| | |||||| Sbjct 19790 CTCATA--GACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATAA 19847 Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGG-ATANNN 47686 |||||||||||||||| | |||| || ||||| | ||| |||| ||| Sbjct 19848 ATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATACGC 19907 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 |||| ||| || |||||||| || ||||| || || |||| || | | Sbjct 19908 ATTAAAACA-AATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCAT 19966 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||| || | || ||||| | ||| || | |||| ||| ||||||||||||||| Sbjct 19967 ATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAATTTACATCAATAATTTTATTTAGATT 20026 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT--TTATA 47864 || ||| ||||||| | |||| | | | || | | || Sbjct 20027 CTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATT 20086 Query 47865 -ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG- 47922 |||||| |||| | || || ||||||||||| || ||||| || |||| || || || Sbjct 20087 CACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCTG-ATGAGG 20145 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 | |||| || ||||||| || | || | ||||| ||||||||||| || | || | Sbjct 20146 TGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGT 20205 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | | || |||| || || |||||||| | || ||||| ||||| | || | Sbjct 20206 TGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTG 20265 Query 48043 ATTCAATGATAGATTTCCAAACAGTCCTAGC-CT---TTATAACAGCTCTAGCTTTATTA 48098 ||| || |||| |||||||| | ||| || || | || ||| | Sbjct 20266 CTTCGATAATAGCTTTCCAAAGAACTTGAGCTCTCACTTGTTTCACGA--AGCG--ACCC 20321 Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCC 48157 || | ||| ||||| ||| || |||||||| || || | ||| | | ||| || Sbjct 20322 TCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCTCACCCCA-ACAGTCTGCTAGTCC 20380 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||||||||||| || ||||| | |||||| | || ||| |||||| |||| || Sbjct 20381 AGGACATTCATGGGGGCACATGATACTCCAATCTTGATTGCTTTCTACTCTTTTCATGAA 20440 Query 48218 TATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | || |||||||| | ||| ||| |||| || || | | | |||||| || ||| Sbjct 20441 CAAGTCAGGTATCCATAAAGC-ATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAG 20499 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 | ||| |||| | ||||| || || | |||||||||||||||||||||||| ||||| | Sbjct 20500 TGTTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGG 20559 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | | || |||| ||||||||||||||| |||| ||||| ||||| ||||| |||| Sbjct 20560 CAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAA 20619 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||||||||| || || | |||||| || | |||||| || || | |||||| |||| Sbjct 20620 CTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCT 20679 Query 48457 TAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | ||||| || | | || || || |||||| ||||| || ||||| || || || Sbjct 20680 TTGCTCTAATGCAGT-GTACATG-AAGACCTATCCCACCAGCTGACTTAGAAATGAGGGC 20737 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| |||| | || ||||||||||| || || |||||||| |||| || ||||| Sbjct 20738 ACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAA 20797 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 || ||| | ||| || | |||| ||| || | |||||| |||||| | Sbjct 20798 GCATGAAGATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAGAGTTGGACTTGCATGTGT 20857 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATG 48694 ||| |||| ||||| | | || || || | ||| | || || || | ||| Sbjct 20858 AAAATATTTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATG 20917 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 ||| |||||||| || ||||| | ||||| || || ||||| Sbjct 20918 TATTCCTATAGAAACTCGCATGAGCATATGCTGTGGCCTTTC 20959 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 ||| |||||||||||||| | |||||| || | | ||| ||||| | ||| |||||||| Sbjct 21349 TTTCTTTGTTTCTTTATGTAAATTAGAAATGGCCAATCTTGCAGCAAGTATTGCATAATC 21408 Query 48986 TGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAG 49044 |||||| || || ||| ||| | | ||||||| ||||| |||| | ||| || Sbjct 21409 GGGATGATCAGTAGT-CATAGTAGCGGCTGTTTCTGCAGCTAAGTTATCAAGTTCAACAG 21467 Query 49045 TAGTTACACCTGTATATATTCCTTGAATAACTTTCA 49080 | || || || || ||||| || | || ||||||| Sbjct 21468 TGGTCACTCCAGTGTATATACCGTTTATGACTTTCA 21503 >seq2446 Length=565066 Score = 113 bits (124), Expect = 5e-20 Identities = 246/366 (67%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 136632 TAATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATT 136689 |||||||||| ||||| || |||||||| ||| | || |||| || || | ||| | Sbjct 540531 TAATGACTCCAGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAAT 540474 Query 136690 TAAAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGT 136749 || || | ||| || ||||| || |||| || ||||||||||| ||| | ||||| || Sbjct 540473 GAAGAAATGTCCTAACGGAATGTTCTCAGAGATCAAATATGACGGTGAAAGGGTACAAGT 540414 Query 136750 TCACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACA 136809 || || || || || | ||| || ||| |||| | ||||| || | ||| Sbjct 540413 GCATAAAAAAGGGAATGAGTTTAAATATTTCTCTAGAGCATTAAAACCTGTTATGGCACA 540354 Query 136810 TAAAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTAT 136869 |||||| | || |||| || ||| |||| |||| ||| ||| | | | | || Sbjct 540353 TAAAGTCAGTCATTTTAAGGATTATTTACCACAAGCATTTCCAAAGGGGACCGATTTGAT 540294 Query 136870 TTTAGATTCAGAAATAGTACTAGTAGATAAAAATA---ATAAACCATTACCATTTGGCAG 136926 | | ||| | ||| | | | |||||| |||| || || || |||||||| | Sbjct 540293 TCTTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTAC 540234 Query 136927 TTTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGA 136986 | ||||| |||||| || |||| || ||| || | ||||| | ||||| ||||| Sbjct 540233 ACTAGGTATCCATAAACAGTCTGAATTCAAAGATGCACAAGTATGTCTGTTTGTGTTTGA 540174 Query 136987 TTGTTT 136992 ||||| Sbjct 540173 CTGTTT 540168 >seq1613 Length=46735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || |||| ||| ||||| ||||| ||||| || ||||||||||| || || ||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 || |||||| |||| ||||| || ||||| ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087896579000