Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2898 199 3e-46 seq2205 109 5e-19 seq806 98.7 8e-16 seq1608 95.1 1e-14 >seq2898 Length=111689 Score = 199 bits (220), Expect = 3e-46 Identities = 773/1197 (65%), Gaps = 33/1197 (3%) Strand=Plus/Plus Query 105820 TTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGCCC 105879 ||||||||||| |||| ||| || || || ||||||||||||||||| |||| ||| || Sbjct 27206 TTCATGGCATTTAGTATATCACCATTGTCTGCATCTATTTCCCAAGCGAACAGACCACCT 27265 Query 105880 AGTTTGTT--TCGATCGACATATTTAACCTTGCCCAAAACAGAATC-GACGCTATCAAAC 105936 || || || || | |||||||| |||| | ||| ||| | | |||| | Sbjct 27266 AGCTTATTATTCCTT--ACATATTTGGCCTT-CTCAATTGTCGATCTGGCATCATCATAT 27322 Query 105937 GAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCAAAC 105996 | ||||| || ||| ||||| | |||||||| || |||||| | Sbjct 27323 GTAATTAGGTCACCAGTTTCCTTCCTAAATACGTAAGGTGCTTGAGCCACTTTGTCATAA 27382 Query 105997 GTGTACACGTACGTG--TTCAG---TTTTGTTTGA-ATCTGTCGGTAATCTACGACGCCG 106050 |||| | || || || || ||| ||| | |||| || ||| || || || || Sbjct 27383 TGGTACTCCCACTTGCCTTGAGCAATTTCGTTGGCTATCTCTCTGTAGTCCACTACACCA 27442 Query 106051 TCCTCCCAAGTGCCC--GACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCAG 106108 |||| ||| || || ||| |||||| || || | || | || ||| | | Sbjct 27443 TCCTGCCAGGTACCTTTGAC-CGGGCCAGTGGCT-ACACCAGTGAATGGGTTTCCGTCTT 27500 Query 106109 TATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGT 106168 | ||| | | || || ||||| || ||||||||||| || || || |||| ||||| | Sbjct 27501 TGTAACCGTTGACTCCAGTCCAACCACGGCCGTACATAGCTACACCAACGACAATTTTCT 27560 Query 106169 TGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTT 106228 | || ||| | || || || | ||| || | | |||||||| | || | Sbjct 27561 TAGGGCTGACTCCCTGAGCCAACAGGAATTTGACACCGAAGTCAGTTGTGTAAGTCTCCT 27620 Query 106229 CGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGT-GTTCGACCAC 106287 || ||||| || || | | | | ||| | ||| ||| ||| ||| ||||| Sbjct 27621 TGGGGTTCCAGGCGGGAGCGTGCAGGGCAGCTTGGTGGCCAAGAG-TGTCGTTTGACCAA 27679 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || || || || ||||| ||||| | ||| || | ||||| || | || || | || Sbjct 27680 GCTCCCTTGAAGTCGTAGCTCATCAAGAAGATGTGGTCCATGTACTGCTGAGCCGCTTTG 27739 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 |||| ||| || ||| ||||| | || | ||| || || || | |||||| Sbjct 27740 TAGTCTACTACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAAGTCAGTTCGTATTTC 27799 Query 106408 TTGCCCGTTT--GCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGA 106465 || || || | |||| | |||| ||||| | | || || | || |||| ||| Sbjct 27800 TTTCCAGTCTTGGCAGAC--AGCTCGTTAAGCATCTCTCTCAGTTCCTTCATCAGCTCGA 27857 Query 106466 CATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTG 106525 | || | | |||| || | || | | ||| || || || || || || | Sbjct 27858 CGTAGATGTGACCGTCA---TCAGGGCTACCGAGATCAGGGTTAGCGCCCTTACCACCAG 27914 Query 106526 GAAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTA 106585 | || ||||| || || || || |||||||| |||||||| || | || ||||| | Sbjct 27915 GGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTCCAGGTTTCAAGGAAGTCCTTCA 27974 Query 106586 CAGAATTTACAAACACGTTTCTTTTTTCAAC---GTCA-TGCATAAAATAGAAGGGGTCT 106641 |||| | || || || ||| | || ||| |||| || | || | |||| || || Sbjct 27975 CAGAGTCAACGAAG-CGCTTCCTCTT--AACCTTGTCAGTGAAGAAGA-AGAATGGATCA 28030 Query 106642 GATAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCC 106701 | || |||||||| || | || || | | || | | || ||||| ||| | Sbjct 28031 GCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAGGTCAGGTCTTGCCTGTTTCAAC 28090 Query 106702 GCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGC 106761 ||||| |||||| || ||||||||||| || |||||||| | | || || ||||| Sbjct 28091 ATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTTCCAGGACGCCAGACCCTTTTGT 28150 Query 106762 GGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTG 106821 || ||||| | || ||||| || |||||||| || ||||| || || | | || || Sbjct 28151 GGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATACTTTGAAGTCCTCCCTGCCACTG 28210 Query 106822 CATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCA 106881 || ||| ||||| || || || || || ||| ||| || ||||| || ||| Sbjct 28211 CAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTCTTTCAAACTGTCGTTGATGCCA 28270 Query 106882 TCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACT 106941 || || |||||||| || || |||||||||| | ||| | | ||| || | || || Sbjct 28271 TCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGGTAAGATTCGGGATGGGTACG 28330 Query 106942 TTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACA 106998 || ||||| || || | | || |||||||||||||| || || ||| | ||| Sbjct 28331 CGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGACGAAGTAAGCGCCAACA 28387 >seq2205 Length=656796 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || |||||||| | |||||||| ||||| ||| ||| ||| |||| Sbjct 546338 AATGCAGATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTC 546279 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||||||| ||||||||||| | || ||| || Sbjct 546278 AGACACTATTGAGAATGTAAAGGCAAAAATCCAGGACAAAGAGGGCATTCCGCCAGACCA 546219 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | |||||||| || || ||||| ||||||||| ||| | | || ||||| Sbjct 546218 GCAACGTCTTATCTTCGCCGGTAAACAGTTGGAAGATGGCCGCACTCTTTCAGACTATAA 546159 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| ||||| ||||| ||| |||| | || | ||||||| Sbjct 546158 CATCCAAAAGGAATCCACTCTTCACTTGGTGCTCAGGCTGAGAGGAGG 546111 >seq806 Length=81131 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| |||||||||||||| ||| ||||| || Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || |||| || |||||||||||| | || |||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAA-GACAAAGAGGGAATTCCACCAGATCA 45980 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || || || || || || | ||||| ||| | ||||||| || Sbjct 45979 ACAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAA 45920 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || || || | || |||| || |||| || || Sbjct 45919 TATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAAT 45869 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||||||||| || || |||||||| || || || ||||| Sbjct 48636 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCT 48577 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| || || ||||| | || ||||| Sbjct 48576 GACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCAG 48517 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || || | |||||||| |||||||| ||||||||| | | | ||| | || || | Sbjct 48516 CAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTAT--CAGACTACA 48459 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || |||||||||||||| || ||| | ||||| | || || ||||| || Sbjct 48458 ATATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGAAT 48407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||| |||||||| ||||| |||||||| || || ||| || || || Sbjct 48409 AATGCAAATATTCGTAAAAACTTTAACTGGTAAAACAATAACTTTAGAAGTTGAGCCGTC 48350 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| ||||| || || || || | ||| ||| || Sbjct 48349 TGACACAATTGAAAATGTCAAAGCCAAAATACAGGATAAGGAAGGTATTCCCCCAGACCA 48290 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| |||| ||||| || |||||||| || || ||| ||| | | |||||||| Sbjct 48289 GCAGCGACTGATCTTCGCAGGCAAACAGTTAGAGGATGGCCGCACTCTTTCTGATTATAA 48230 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || || || || || ||||| ||| ||||| Sbjct 48229 TATCCAGAAGGAGTCAACTCTCCACTTGGTA 48199 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || ||||| ||||| || || ||||| || ||| ||| ||| ||||| Sbjct 30304 ATGCAGATTTTCGTAAAGACATTGACTGGAAAAACTATCACCCTTGAAGTGGAGCCTTCC 30363 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| |||||| ||||| || ||| | ||| || || Sbjct 30364 GATACCATTGAAAACGTAAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 30423 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| ||||| || | |||||| ||| | |||| |||||| Sbjct 30424 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACTATAAC 30483 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || |||||||| || ||| |||| || | | ||||| || || Sbjct 30484 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGGTAT 30533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| || ||||||||||| || ||| ||| || || || Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || |||| || |||||||| || | ||| ||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAA-GACAAAGAAGGCATTCCCCCAGATC 29509 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||| |||| ||||| || || || || || ||||| | || || | || || | Sbjct 29510 AGCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACA 29569 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 |||| |||||||||||||| || ||| Sbjct 29570 ACATCCAAAAAGAATCTACGCTTCAC 29595 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || ||||||||||| ||| ||| ||||| || Sbjct 30760 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACCATCACCTTAGAAGTTGAACCATCT 30819 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| || ||| | ||| ||| || Sbjct 30820 GATACCATTGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 30879 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | |||||||| || || || || |||||||| || | |||| |||||| Sbjct 30880 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGGCGTACCCTTTCCGACTATAAC 30939 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| || |||||||| || ||| |||| || Sbjct 30940 ATTCAGAAGGAATCTACCCTTCACTTGGTTTT 30971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | || ||||| || |||||| |||| || |||||| Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| || | || ||| || Sbjct 29680 GATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 29739 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || |||||||| ||||| || |||||||| || | | || || ||| Sbjct 29740 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 29799 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||| || || ||| |||| Sbjct 29800 ATTCAAAAGGAATCCACCCTTCACCTGGT 29828 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || || || ||||| || ||| |||| || || || Sbjct 31444 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATCACCCTCGAAGTCGAGCCATCT 31503 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| |||||| ||||| || ||| | ||| ||| || Sbjct 31504 GATACCATCGAAAACGTTAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 31563 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | |||||||| || ||||| || |||||||| ||| | | || || ||| Sbjct 31564 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGACTACAAC 31623 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || || ||||| |||||||||||| ||||| Sbjct 31624 ATCCAGAAAGAGTCTACTCTGCACTTGGTA 31653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425389375752525