Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2205 165 4e-36 >seq2205 Length=656796 Score = 165 bits (182), Expect = 4e-36 Identities = 272/390 (70%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | ||| || || || || ||||| | ||||| |||| ||||| || | Sbjct 20424 TCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGCATAGAATAGCTCTCTGGCACGG 20483 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | ||||||||| || ||| |||||||| | ||| | ||| ||||| ||||| | ||||| Sbjct 20484 ACTTCTTCTTTCCCAGTG-TTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATGCCA 20542 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 ||||||||| || || ||||| || |||||| || ||||| ||||| |||| Sbjct 20543 TGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATATCG 20602 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | ||| ||||| | ||||| || |||| ||| | || | || ||||| | Sbjct 20603 AGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGTACC 20662 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | || | | ||| | | |||||| ||| |||||| ||| || |||||||| | Sbjct 20663 AGCTATATAAGTTCCCTTTGCTCTAATGCAGTGTACATGAAGACCTATCCCACCAGCTGA 20722 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 || ||||| ||||| | | | || || ||||||| | ||||||||| | | Sbjct 20723 CTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCT 20782 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTG 26310 |||| ||| | ||| || ||||||||||| Sbjct 20783 CATTGCTATAAGAAAGCATGAAGATAATTG 20812 Score = 127 bits (140), Expect = 1e-24 Identities = 111/136 (82%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAGTGAATGGTTCAAAACATT 25073 ||||| || ||||| |||| |||| |||||| ||| ||||| ||||||||||| ||| Sbjct 19551 AATTCACCTGACAAGACTCGTCTT--TGATAAATGTTGGAAGTAAATGGTTCAAATGATT 19608 Query 25074 CATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAAT 25133 |||||||||| || ||||||| ||| ||||| ||||||||| |||| |||||| |||| Sbjct 19609 CATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAAT 19668 Query 25134 TTCTCAAACCATATTT 25149 |||| | ||||| ||| Sbjct 19669 TTCTAAGACCATGTTT 19684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253030825323125