Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq806 150 4e-31 seq1608 122 2e-22 seq1613 100 6e-16 >seq806 Length=81131 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | ||||| ||| || |||||| || || Sbjct 48635 ATACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 48694 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||||||||| || || ||||| |||||||||||||| || Sbjct 48695 GAAAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 48754 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||| || || || | ||| || | ||| Sbjct 48755 GGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCC 48814 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| || |||||||| || || || || || | ||| |||||||| || Sbjct 48815 ACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 48867 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | ||| || || | ||| | ||| || ||||||||||||| Sbjct 48179 ATACCACCACGCAGACGAAGTACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCA 48238 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || || ||||| || || ||||| | || ||| || || || Sbjct 48239 GAAAGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGG 48298 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| |||||||| ||| ||||| || | || |||| || Sbjct 48299 GGAATACCTTCCTTATCCTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCA 48358 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| ||| || |||||||||||||| ||||| | ||||| |||||| Sbjct 48359 ACTTCTAAAGTTATTGTTTTACCAGTTAAAGTTTTTACGAATATTTGCATT 48409 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192321 ACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTC 192380 ||| |||||||| || | |||| ||||| |||||| || || |||||||| ||| | Sbjct 48421 ACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGATAATGTGCGTCC 48480 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| ||||| ||||| || |||||||| |||| || ||||||||||| || || || || Sbjct 48481 ATCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGGGATACCCTCCTT 48540 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 ||| || ||||| ||| ||||| || | || || | || || |||| ||| || Sbjct 48541 ATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAACCTCTAAAGTGAT 48600 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| ||||| |||||||| | || || ||||| Sbjct 48601 GGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCAT 48636 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| | | || |||||||| | || | || ||| || ||||| ||||| Sbjct 45869 ATTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGA-ATATTGTAATC 45927 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| | || || | || |||||||| || || ||||| |||||||| || Sbjct 45928 GGAAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGG 45987 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||| ||||| ||||| ||||| ||| ||||| || | || || | ||| Sbjct 45988 TGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTC 46047 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||||||||||||||| ||||| | ||| || ||||| Sbjct 46048 AACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 127 bits (140), Expect = 4e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | |||||||| || |||| || || ||||| |||||| Sbjct 46097 ATGCCGCCTCTAAGACGGAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAATCA 46156 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||||| |||| |||||||| || || || ||||| ||||||||||| || || Sbjct 46157 GACAATGTTCGTCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCTCTGTTGGTCTGGA 46216 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || |||||| || ||||| || | || || | || Sbjct 46217 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATTGTGTCAGATGGCTCA 46276 Query 192487 ACTTCTAGAGTAATGGTTTT 192506 |||||||| || || || || Sbjct 46277 ACTTCTAGTGTGATAGTCTT 46296 >seq1608 Length=32450 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || || || | |||| ||||| ||| || |||||| Sbjct 30761 ATACCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCA 30702 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||||||||| | | ||| || || || Sbjct 30701 GAAAGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGG 30642 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || ||| ||| ||||| |||| || || | || Sbjct 30641 GGAATTCCCTCTTTATCTTGAATCTTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCC 30582 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| |||||||||||||| | || || | || |||||||| Sbjct 30581 ACTTCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 30532 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || || || | |||| || || || ||||| || Sbjct 30533 ATACCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCG 30474 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| || | || || ||||||||||| | | ||| || ||||| Sbjct 30473 GAAAGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGG 30414 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||||| || || | ||| || | || Sbjct 30413 GGAATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCC 30354 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| ||||| ||||| || | || |||||||| Sbjct 30353 ACTTCAAGGGTGATAGTTTTTCCAGTCAATGTCTTTACGAAAATCTGCAT 30304 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || ||||| ||||||| |||||| || || || ||| Sbjct 31217 ATACCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 31158 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || || ||||| | | ||| || || || Sbjct 31157 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 31098 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || || |||||||| |||| || || | || Sbjct 31097 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCC 31038 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||||||||| | || || | || || ||||| Sbjct 31037 ACTTCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || || || | |||| || || || ||||| || Sbjct 30989 ATACCACCACGCAGACGCAAAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCG 30930 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || |||||||| ||||| | | ||| || || || Sbjct 30929 GAAAGGGTACGCCCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGG 30870 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || || || ||||| || | ||| || | ||| Sbjct 30869 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGATGGTTCA 30810 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||||||||| | || || | || || ||||| Sbjct 30809 ACTTCTAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30760 >seq1613 Length=46735 Score = 100 bits (110), Expect = 6e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 49843 AACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 49902 || |||| || ||||| || | ||||| || || || ||||| ||||| ||||||| || Sbjct 40315 AAACCTCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCT 40374 Query 49903 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAA 49962 | || | |||||| |||||||||||||| | ||| |||||||| || || ||| |||| Sbjct 40375 TCTTCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAA 40434 Query 49963 ATGCTATTAT 49972 | || || || Sbjct 40435 AGGCAATGAT 40444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984442474391250