Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq806 145 1e-29 seq1608 109 1e-18 seq1613 98.7 2e-15 seq2728 84.2 4e-11 seq1662 84.2 4e-11 seq947 84.2 4e-11 >seq806 Length=81131 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | | || |||||||| | || | || || |||||| ||||| Sbjct 45869 ATTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCG 45928 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | || |||||||| ||||| ||||| ||||| || ||| Sbjct 45929 GAAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGT 45988 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| ||||| ||| ||||| || || || || | ||| Sbjct 45989 GGAATTCCCTCTTTGTCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCA 46048 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||||||||||||||| ||||| | || || ||||| Sbjct 46049 ACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | ||| || || | ||| | ||| || ||||||||||| Sbjct 48179 ATACCACCACGCAGACGAAGTACCAAGTGGAGAGTTGACTCCTTCTGGATATTATAATCA 48238 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || || ||||| || || || || | || ||| ||||| || Sbjct 48239 GAAAGAGTGCGGCCATCCTCTAACTGTTTGCCTGCGAAGATCAGTCGCTGCTGGTCTGGG 48298 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| |||||||| ||| ||||| || || || |||| || Sbjct 48299 GGAATACCTTCCTTATCCTGTATTTTGGCTTTGACATTTTCAATTGTGTCAGACGGCTCA 48358 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| ||| || |||||||||||||| ||||| | |||||| |||||| Sbjct 48359 ACTTCTAAAGTTATTGTTTTACCAGTTAAAGTTTTTACGAATATTTGCATT 48409 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | ||| | ||||| ||| || ||||| || || Sbjct 48635 ATACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 48694 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||||||||| || || || || ||||||||||| || || Sbjct 48695 GAAAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 48754 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||| || || || ||||| || | ||| Sbjct 48755 GGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCC 48814 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| || |||||||| || || || || || | || |||||||| || Sbjct 48815 ACCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCATGTT 48867 Score = 113 bits (124), Expect = 8e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || | |||||||| || |||| || || |||||| ||||| Sbjct 46097 ATGCCGCCTCTAAGACGGAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAATCA 46156 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | |||| | || |||||||| || || || || || |||||||||||||| || Sbjct 46157 GACAATGTTCGTCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCTCTGTTGGTCTGGA 46216 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || |||||| || ||||| || || || || | || Sbjct 46217 GGAATACCTTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATTGTGTCAGATGGCTCA 46276 Query 172020 ACTTCTAGAGTAATGGTTTT 172039 |||||||| || || || || Sbjct 46277 ACTTCTAGTGTGATAGTCTT 46296 >seq1608 Length=32450 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || || || | |||| ||||| || || ||||| Sbjct 30761 ATACCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCA 30702 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || || |||||||| || | | ||| ||||| || Sbjct 30701 GAAAGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGG 30642 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||||||||| || ||| ||| ||||| ||||| || || | || Sbjct 30641 GGAATTCCCTCTTTATCTTGAATCTTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCC 30582 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| |||||||||||||| | || || | ||| |||||||| Sbjct 30581 ACTTCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCAT 30532 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || || ||||| || | || || ||||| ||||| || |||||||| Sbjct 29774 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATACCTTCTTTG 29715 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| ||||||||||| | || ||||| || ||||| Sbjct 29714 TCTTGAATTTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCGACTTCGAGGGTAATT 29655 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| | ||||||| ||| |||||||| Sbjct 29654 GTCTTACCAGTAAGCGTTTTAACGAAAATCTGCAT 29620 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || || || ||||| ||||||| |||||| ||| || || || Sbjct 31217 ATACCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 31158 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| || || || || || || | | ||| ||||| || Sbjct 31157 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGG 31098 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || || || |||||||| ||||| || || | || Sbjct 31097 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCC 31038 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||||||||| | || || | ||| || ||||| Sbjct 31037 ACTTCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || || || | |||| || || ||| ||||| || Sbjct 30989 ATACCACCACGCAGACGCAAAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCG 30930 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| || |||||||| || || | | ||| ||||| || Sbjct 30929 GAAAGGGTACGCCCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGG 30870 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 30869 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGATGGTTCA 30810 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || |||||||||||||| | || || | ||| || ||||| Sbjct 30809 ACTTCTAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30760 >seq1613 Length=46735 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/131 (77%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 39144 AAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTC 39203 |||||| | || ||||| || | ||||| || || || ||||| ||||| ||||||| | Sbjct 40315 AAACCT-CATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGC 40373 Query 39204 TTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCA 39263 || || | |||||| |||||||||||||| | ||| |||||||| || || ||| ||| Sbjct 40374 TTCTTCATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCA 40433 Query 39264 AATGCTATTAT 39274 || || || || Sbjct 40434 AAGGCAATGAT 40444 >seq2728 Length=500889 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 256112 CAGCCTATATA-CGTCCCACTGCTGGGCACAGGCCTCCTCTCGGAATGAGAGGGCTTGGG 256170 |||||| | || |||||||||||||||||||||||||||||| | |||| || ||||| Sbjct 224992 CAGCCTTTTTATCGTCCCACTGCTGGGCACAGGCCTCCTCTCACACGGAGAAGGATTGGG 224933 Query 256171 CCATAGTTCCCACGCGGGCCCAGTGCGGATTGG 256203 | || | |||||| || || |||||||||| Sbjct 224932 CATTAATCACCACGCTTGCTCAATGCGGATTGG 224900 >seq1662 Length=37955 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 256112 CAGCCTATATA-CGTCCCACTGCTGGGCACAGGCCTCCTCTCGGAATGAGAGGGCTTGGG 256170 |||||| | || |||||||||||||||||||||||||||||| | ||||||| ||| | Sbjct 27833 CAGCCTTTTTATCGTCCCACTGCTGGGCACAGGCCTCCTCTCACACGGAGAGGGATTGAG 27892 Query 256171 CCATAGTTCCCACGCGGGCCCAGTGCGGATTGG 256203 | || | |||||| || |||||||| |||| Sbjct 27893 CATTAATCACCACGCTTGCTCAGTGCGGGTTGG 27925 >seq947 Length=117156 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 256112 CAGCCTATATA-CGTCCCACTGCTGGGCACAGGCCTCCTCTCGGAATGAGAGGGCTTGGG 256170 |||||| | || |||||||||||||||||||||||||||||| | ||||||| ||| | Sbjct 61264 CAGCCTTTTTATCGTCCCACTGCTGGGCACAGGCCTCCTCTCACACGGAGAGGGATTGAG 61205 Query 256171 CCATAGTTCCCACGCGGGCCCAGTGCGGATTGG 256203 | || | |||||| || |||||||| |||| Sbjct 61204 CATTAATCACCACGCTTGCTCAGTGCGGGTTGG 61172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905102340255000