Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2205 183 9e-41 seq2664 102 2e-16 >seq2205 Length=656796 Score = 183 bits (202), Expect = 9e-41 Identities = 691/1068 (65%), Gaps = 21/1068 (2%) Strand=Plus/Plus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371 ||| || ||| || |||||||||| ||||| || | || ||| | | | | || |||| Sbjct 19829 TTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTC 19888 Query 155372 AGAT--GTAAATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 | | |||| | ||| ||| | ||||| || ||||| || || |||||||| Sbjct 19889 ACTTTCGTAA--GGTATACGCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATT 19946 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCAC 155488 |||| || || ||||| ||| | ||| || || | ||||||| |||| || Sbjct 19947 CCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCT-CTGGCACTGGGTAATAATTTAC 20005 Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATAC-CTTGGTTACGTCTGCTAATTTCACAT 155547 ||||||||| ||||||| ||| | | ||| ||| || || || |||||| Sbjct 20006 ATCAATAATTTTATTTAGATTC-TGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGA 20064 Query 155548 AGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATA 155607 | | | ||||||| |||||||| ||||||||| | | |||| || || ||||| || | Sbjct 20065 AATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACA 20124 Query 155608 CCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTG 155666 | || || | || | | ||||||||||||| ||| ||||| ||| | || Sbjct 20125 CAGCCACTTCATCTGATGAGG-TGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTA 20183 Query 155667 ATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTAT 155726 || || || || ||||| ||||| ||| || || || | ||| || || || |||||| Sbjct 20184 ATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTAT 20243 Query 155727 GGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGAGGTCACGGGCATTAA 155784 || |||||||| || | ||||| || | ||| |||| ||| || | | || | | Sbjct 20244 GGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTT--CCAAAGAACTTGAGCTCTCA 20301 Query 155785 TTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCAC 155844 ||| || | | | || || ||||||||| ||||| | | | ||||||| Sbjct 20302 CTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCTCAC 20361 Query 155845 CGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTAC 155904 | |||| || |||||||| || | || |||||| | | |||| || ||| | Sbjct 20362 CCCAACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTGATTGC 20421 Query 155905 CGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCT 155964 ||| | | ||| || | ||| ||| | ||||||||| || || | || | Sbjct 20422 TTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGCATAGAATAGCTCTC-TGGCA 20480 Query 155965 TTGACTCCT--CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATG 156022 |||| || || | ||| ||||| | || | |||||| ||||||| ||| Sbjct 20481 CGGACTTCTTCTTTCCCAGTG-TTCTTTTTCAAATCAAGGAATTCAAATATATCAGCATG 20539 Query 156023 GTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATA 156079 ||| || | || || ||||| || | | || || || || |||||||| Sbjct 20540 CCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTACATA 20599 Query 156080 CCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGT 156139 |||||||| || ||| | || | || ||| || | | |||||| || ||||| || Sbjct 20600 TCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGAGACACCATTTGT 20659 Query 156140 TCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGA 156199 || |||| | || || | || || | ||| || || || ||||| | Sbjct 20660 ACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGTGTACATGAAGACCTATCCCACCAGC 20719 Query 156200 CCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATC 156259 | |||||||| | || |||| |||| || | |||| || ||||| |||||| Sbjct 20720 TGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCTATCATC 20779 Query 156260 TTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319 ||||| || ||| |||| ||| |||||| |||||||| ||| | || ||| || Sbjct 20780 CCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAG 20839 Query 156320 TGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGT 156367 || || ||||||| ||||||| || | |||| | || ||| || Sbjct 20840 AGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTAGGT 20887 >seq2664 Length=500000 Score = 102 bits (112), Expect = 2e-16 Identities = 191/275 (69%), Gaps = 12/275 (4%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || || ||||| || || ||||| || ||| Sbjct 66023 TCCATAGCCTTTATCAGACGACGCTGGATGTATCCAGTCTCAGCGGTCTTTACGGCAGTA 65964 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT---AGC 302691 ||||| ||||| ||||||| |||||||| ||||| |||| ||| | | | || Sbjct 65963 TCAATAAGACCTTCACGACCTCCCATAGCGTGGAA--ATAGAA-TTCAGATGGAGTAAGA 65907 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748 || ||| | | ||| | || |||||||| | | |||||| || ||||||| ||| Sbjct 65906 CCGGCAAGATACGAGTTTTCTACGAAACCTCTAGACTCGGGACCGTAATCGTCT---TTG 65850 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 | || || |||| || || || | || | || ||||| || || ||||||||| Sbjct 65849 ATGAAATGCGGCAATGTTCTTTTACGGAATCCAAACGGAATACGTTTACCTTCAACGTTC 65790 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || || | || | ||| | ||| |||||||| Sbjct 65789 TGTTGCCCTACACAAGCAATAACCTGGGAAATATT 65755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471761498452575