Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq649 197 1e-45 seq2898 179 3e-40 seq2295 172 5e-38 seq1608 95.1 1e-14 seq806 89.7 4e-13 >seq649 Length=917424 Score = 197 bits (218), Expect = 1e-45 Identities = 138/157 (88%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 || |||| || | |||||||||||||| | || ||||||||||||||||| ||||||| Sbjct 60834 AAGTGGCAGGTCTGCCAAGCGCCTTGGCCACCTCAGGCATGTTGACGATGACGGTCTTGA 60893 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 ||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||| | Sbjct 60894 TGCCGTTGCCCTTGCCCTCGACCTTGGCACAGATGCGCGGCATCTTGTACCGGTAGAAGG 60953 Query 34607 CGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||||||||||||||||||| |||||||| | |||||| Sbjct 60954 CGTCCGCCACATTGCGGTTGACGTTCACCGACCCCAT 60990 Score = 167 bits (184), Expect = 2e-36 Identities = 137/167 (82%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| || || ||||||||||||||||| || ||||| || |||||||| Sbjct 52599 GCGGGCGGGTTCTTGAGGATGAAGGTGTTGAGCTTGTGGTTGAAGTCCAGGGTGCCGTGG 52658 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| |||| |||| || | ||||||||| ||||| Sbjct 52659 TAGCCGCAGGCCTTGCAGCCCTGCGAGATGGTGTTGCGCTTGGTGGACACGATCAGCTCC 52718 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 52719 GTCTCCGGGTTGTCGCACTCCGGACACAACACGAACTTGCGGATGAA 52765 Score = 167 bits (184), Expect = 2e-36 Identities = 137/167 (82%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| || || ||||||||||||||||| || ||||| || |||||||| Sbjct 56411 GCGGGCGGGTTCTTGAGGATGAAGGTGTTGAGCTTGTGGTTGAAGTCCAGGGTGCCGTGG 56470 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| |||| |||| || | ||||||||| ||||| Sbjct 56471 TAGCCGCAGGCCTTGCAGCCCTGCGAGATGGTGTTGCGCTTGGTGGACACGATCAGCTCC 56530 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 56531 GTCTCCGGGTTGTCGCACTCCGGACACAACACGAACTTGCGGATGAA 56577 Score = 154 bits (170), Expect = 1e-32 Identities = 153/198 (77%), Gaps = 15/198 (8%) Strand=Plus/Plus Query 33584 CGGCCACTTTGGGCAGCAGCGCC---TGGTCCAAAACGCAcagcgcggtgagcgcg---- 33636 ||| ||||||||| ||||||| |||| | |||||||||||||||||||| Sbjct 50515 CGGGCACTTTGGGGCGCAGCGCGGCGTGGTGCT---CGCACAGCGCGGTGAGCGCGTGCA 50571 Query 33637 -----gcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtact 33691 || ||||| |||||| | ||| ||||||| | |||||||||||||||||| Sbjct 50572 GCACGGCGCGCTGGGCGCGCGGCTCGGCGCGCGTGCAGCGCAGCAGCAGCGCGCGGTGGC 50631 Query 33692 tgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCG 33751 |||||||| || || | ||| |||||| |||||||||||| | || ||||||||||| Sbjct 50632 GCCGCACGTCGCCCGCCAGCGCGCCCGGCCGCACCAGCACCTCCAGCATCACCAGCGGCG 50691 Query 33752 CCTTCGACTTCACCTCCA 33769 |||||||||||||||||| Sbjct 50692 CCTTCGACTTCACCTCCA 50709 Score = 122 bits (134), Expect = 7e-23 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCATC 33486 |||||||| ||||||||||| || ||||||||| || |||||||||||||| || ||| Sbjct 48247 TCCTCGGCGTGCTGCAGCCACTCGAGGAAGGGCGCAGCACGGCGCCGCACGTCGGCGATC 48306 Query 33487 TCCTCGCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTTCTT 33545 |||| || | ||| ||||| ||||||||| | ||||||||| |||||| |||| Sbjct 48307 ACCTCCTTGC-TGGCGTACTTGCGCGACGGCTTGGCAGACCACTCCAGGATCGCCTTCTC 48365 Query 33546 TTCCACCACGTTCAAGTCGTACAGCAGCT 33574 ||||| | || | |||||||||||||| Sbjct 48366 CTCCACGATGTCCTCGTCGTACAGCAGCT 48394 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||||||||| | ||| ||||||| ||| |||||| |||||||| || ||| Sbjct 53033 CCGTCCAGCAGGTCCTGCAGCTTGGCGGAGTCATGGCTGCCGTTCACGATGAACCGCTCG 53092 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || ||| | || | |||||| |||||||| | |||||| |||||||| || || || Sbjct 53093 TTCTTGAAGTCAAACTGCGTCTGCGCGCCTAACTCGCAACCGAAGTATTTCGTAGG 53148 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||||||||| | ||| ||||||| ||| |||||| |||||||| || ||| Sbjct 56845 CCGTCCAGCAGGTCCTGCAGCTTGGCGGAGTCATGGCTGCCGTTCACGATGAACCGCTCG 56904 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || ||| | || | |||||| |||||||| | |||||| |||||||| || || || Sbjct 56905 TTCTTGAAGTCAAACTGCGTCTGCGCGCCTAACTCGCAACCGAAGTATTTCGTAGG 56960 >seq2898 Length=111689 Score = 179 bits (198), Expect = 3e-40 Identities = 755/1173 (64%), Gaps = 32/1173 (3%) Strand=Plus/Minus Query 28716 GTTGCAGATACGGACGGTGGGCATTTGTCTCCGCTGGAGTACGTTTGGCGG-GAAAATAA 28774 ||||| ||||| |||||| | || ||| | || |||| ||| | | ||| || | || Sbjct 28476 GTTGCCGATACTGACGGTAGCCACTTGCCACCCTTGGACTAC-TCTATCGGAGAGAGGAA 28418 Query 28775 CAAACCTG----GCCGACGCCAGGACAAGACCGTCGCTGCGTATTTTGTGGAATGGAGCG 28830 ||| || || ||| | || |||| || | || || || || |||||| ||| Sbjct 28417 CAAGCCCTTCAAGCAGACTTCTGG-CAAGGTTGTTGGCGCTTACTTCGTCGAATGGGGCG 28359 Query 28831 TGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTGCCCAACCTCTCGCATCTGTTAT 28890 | ||| | | || || | || ||| || || | || || || | ||||| | | Sbjct 28358 TCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATCCCGAATCTTACCCATCTTCTGT 28299 Query 28891 ACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAAACCATACCCG 28950 |||| ||| | || || ||||| || || || |||||||| | ||| || | Sbjct 28298 ACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAACGACAGTTTGAAAGAAATCGAAG 28239 Query 28951 GTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAAGTTGCTATTC 29010 | || || |||| |||||||| || |||| ||| | || || ||||| | |||| Sbjct 28238 GCAGCTTCCAAGCTCTGCAACGATCCTGCAGTGGCAGGGAGGACTTCAAAGTATCGATTC 28179 Query 29011 ACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCCT 29070 |||| |||||||| || | || ||||| |||||||| || | | |||||||| |||| Sbjct 28178 ACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGGTCTGGCGTCCTGGAACGAACCCT 28119 Query 29071 ACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGTTGGCCAATCCACACATCAAAAT 29128 |||| || |||||||| ||||| ||| | || || ||| | || || | || || Sbjct 28118 ACAAGGGTAATTTCGGACAGCTGATGATGTTG--AAACAGGCAAGACCTGACCTGAAGAT 28061 Query 29129 TCTACCGTCCATAGGCGGCTGGACATTGTCCGACCCTTTTTATTTTATGCAC-GACGCGG 29187 |||| ||| | || || ||||| || | || || || | | || | ||| ||| || Sbjct 28060 CTTACCTTCCGTTGGTGGTTGGACCCTGGCTGATCCATTCT-TCTTCTTCACTGACAAGG 28002 Query 29188 AGAAACGGC-GCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGTGTGGAAATTTTTT 29246 || || ||| || || ||||| || |||| || | | |||||||| ||| Sbjct 28001 TTAAGAGGAAGCGC-TTCGTTGACTCTGTGAAGGACTTCCTTGAAACCTGGAAATTCTTT 27943 Query 29247 GACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAACCCGACACTTGGC 29306 || || || |||||||||||||| || || || ||||| ||||||||||| || || Sbjct 27942 GATGGAGTGGACATTGACTGGGAGTTCCCTGGTGGTAAGGGCGCTAACCCTGATCTCGGT 27883 Query 29307 AACGGGGAGCGCGACGCCGACACGTATAACATTTTACTGAAGGAATTGCGCGCAATGCTG 29366 | | || |||| ||| || | | |||||||| || | | ||||| Sbjct 27882 AGCCCTGA---TGACGGTCACATCTACGTCGAGCTGATGAAGGAACTGAGAGAGATGCTT 27826 Query 29367 GATAAACTGCAATTGCAA-ACGGGTAAAACGTATGAATTGACAAGCGCAATCAGCTCTGG 29425 | | ||| | ||| || || || | || ||| |||| || ||||||||||| Sbjct 27825 AACGAGCTG-TCTGCCAAGACTGGAAAGAAATACGAACTGACTTCAGCCATCAGCTCTGG 27767 Query 29426 CCACGACAAAATTGCTGTAGTGAAATACGACGTTGTGCAAAAATTTCTTGATAAAATATT 29485 ||||| ||| ||||| | ||| | | | || | | | || | || || Sbjct 27766 TTGGGACAAGATTCAGGTAGTAGACTACAAAGCGGCTCAGCAGTACATGGACCACATCTT 27707 Query 29486 TCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAACACCGATTTGGGATATCAAACTAC 29545 | ||||| ||||| || || || || ||||||||| | | | || | ||| || | Sbjct 27706 CTTGATGAGCTACGACTTCAAGGGAGCTTGGTCAAACGACACTCTTGGCCACCAAGCTGC 27647 Query 29546 ACTCTACGCACCGAGTTGGAATCCCAACGAGCTTTACAACACTGACCACGCCGT-AAAGT 29604 || |||| || ||||| ||||| ||| ||||| |||||| || || ||| | Sbjct 27646 CCTGCACGCTCCCGCCTGGAACCCCAAGGAGACTTACACAACTGACTTCGGTGTCAAATT 27587 Query 29605 C--GCTCACTAACCAAGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGCCATGTACGG 29662 | | | || || || || ||| |||||| | || || || || |||||||| Sbjct 27586 CCTGTTGGCT---CAGGGAGTCAGCCCTAAGAAAATTGTCGTTGGTGTAGCTATGTACGG 27530 Query 29663 CCGCGGTTGGACGGGCGTGACCGGTTACGTCGGTGACAACTATTTTAAAGGCACAGCTGC 29722 ||| |||||||| || || | ||||||| | | ||| || | || ||| | Sbjct 27529 CCGTGGTTGGACTGGAGTCAACGGTTACAAAGACGGAAACCCATTCACTGGTGTAGCCAC 27470 Query 29723 CGGGCCCGTGACCGGCACTTGGGATGACGGAGTTGTCGACTATCGTCAAATaaaaaaaGA 29782 || || || | || || ||| | || || || || ||||| | | ||| || || Sbjct 27469 TGGCCCGGTCAAAGGTACCTGGCAGGATGGTGTAGTGGACTACAGAGAGATAGCCAACGA 27410 Query 29783 A----CTGAA--CAAGTATATTTACAAATTTGACACGATCGCTAAAGCAGCTTACGTTTT 29836 | || || ||||| ||| | | ||||| | ||| ||||| ||||||| || Sbjct 27409 AATTGCTCAAGGCAAGTGGGAGTACCATTATGACAAAGTGGCTCAAGCACCTTACGTATT 27350 Query 29837 TAACAAAGACAATGGTGATTTAATTTCGTTTGA 29869 || || || | |||||| ||||| | | ||| Sbjct 27349 TAGGAAGGAAACTGGTGACCTAATTACATATGA 27317 >seq2295 Length=223346 Score = 172 bits (190), Expect = 5e-38 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 103670 GAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCGCGCGGTTTGAAGCAACATCCCGAG 103729 ||||||||||||||||||| ||||| | |||||||| | || |||| | || ||| Sbjct 101906 GAAGCTGCGCGTTTGCGCAGTTTTAAAGACTGGCCGCGATGCATGCGGCAAAAACCAGAG 101965 Query 103730 ATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGCTTTTAC 103789 ||||||||| ||||||||||| |||||||| | | || || ||| || || || Sbjct 101966 GAACTTGCCGAGGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGACCAAGTGTTTCTAT 102025 Query 103790 TGCAACGGCGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACACGCGCTT 103849 ||| | |||||| |||| | ||||| | ||||||| || ||| |||| ||||||| Sbjct 102026 TGCGATGGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGGAACAGCACGCGCGC 102085 Query 103850 TGGTTCGGACGCTGCGCATACGTGCTACTTGTCAAAGGCCACGATTATGTACAAAAGGTC 103909 ||||||| |||||||| ||||||| || || || |||| ||| || ||||| ||||| Sbjct 102086 TGGTTCGATCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGTACGTACAGAAGGTG 102145 Query 103910 GTGACCGAATCGTGCGTAGT 103929 || |||| | ||||| || Sbjct 102146 ATGTCCGAGGCCTGCGTGGT 102165 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| ||||| || || || ||||| || ||| | ||| ||||| Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| | | | |||||| || ||| |||||||||||| | ||| ||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||| || | || || || ||| | || || | | ||| || | || ||||| Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| ||||||||||||||| | ||| Sbjct 29571 CATCCAAAAAGAATCTACGCTTCAC 29595 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | || || || || |||||| ||||| |||||| Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || || || ||| ||||||||||| | || || || Sbjct 29680 GATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 29739 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || || |||||||| |||| | || | | || |||||| Sbjct 29740 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 29799 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | ||| |||| | | |||||||| || Sbjct 29800 ATTCAAAAGGAATCCACCCTTCACCTGGTCCTGCGTCTGCGAGGTGG 29846 >seq806 Length=81131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||||||||| || ||||||||||| | ||| || || Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| |||||||| || | || |||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| || ||||| ||||| || || | | || | | |||||||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| ||||| || | || | || |||| || |||| |||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAA 45870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412826631266675