Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1014 120 5e-21 seq2243 86.0 1e-10 seq1133 86.0 1e-10 seq701 86.0 1e-10 >seq1014 Length=142001 Score = 120 bits (132), Expect = 5e-21 Identities = 177/249 (71%), Gaps = 14/249 (6%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 || ||||| ||||| ||||| |||| ||| || ||||||||||||||||| || | Sbjct 34198 CCATGGATAGAAAAATACCGGCCGATAGTATTCAGTGACATCGTGGGCAACGAAGACACG 34257 Query 2018976 GTTGCCTACCTCAAGGC--GCTGGC----CGCCGAC-GGCAACATGCCCAACCTCTTGCT 2019028 || ||| |||| |||| ||| || || ||| || ||| | | | Sbjct 34258 GT-------CTCTAGGCTGGCTGTGTTTGCGCGCACCGGGAACGCTCCTAACATAATAAT 34310 Query 2019029 GGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTT 2019088 ||||| || || ||| ||||||||||| | |||| |||||||||||||| ||| | Sbjct 34311 CGCGGGTCCTCCGGGCGTCGGCAAGACCACCACCATCCTGTGCCTGGCGCGCGCGCTGCT 34370 Query 2019089 GGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGA 2019148 ||||| ||| | ||| ||||||||||| ||||| ||||| |||| |||||| | || Sbjct 34371 CGGCGCCGCCTTCCGCGACGCCGTGCTCGAGCTCAACGCGTCCAACGACCGCGGCATCGA 34430 Query 2019149 CGTCGTGCG 2019157 |||||||| Sbjct 34431 TGTCGTGCG 34439 Score = 116 bits (128), Expect = 6e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 |||||| | || || |||||| || | ||||| || ||||| ||| || | ||| || Sbjct 35565 CTGCCGGCGGGGCGGCACAAGCTGGTGATCCTGGACGAGGCGGACAGCATGACGGAGGGC 35624 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 || |||||||| || || |||||||| |||| | |||| ||||| || ||||| Sbjct 35625 GCGCAGCAGGCGCTGCGCCGCACCATGGAGCTGTACTCGCACACCACGCGCTTCGCGCTC 35684 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 ||| ||||| || || | ||||||| || ||||| || |||||| | ||||| Sbjct 35685 GCCGCCAACAACTCCGAGAAGATCATCGAGCCCATCCAGTCGCGCTGCGCCGTGCTGCGC 35744 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATC 2019401 | |||||||||||||||| |||||| Sbjct 35745 TACTCGCGCCTCACCGACGCGCAGATC 35771 >seq2243 Length=239997 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 154582 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 154523 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 154522 CTCACCCGGGGCATATC 154506 >seq1133 Length=58096 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 15151 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 15210 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 15211 CTCACCCGGGGCATATC 15227 >seq701 Length=89685 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 62269 GCCTCGGTGGCGCAGTAGGCAGCGCGAAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 62210 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 62209 CTCACCCGGGGCATATC 62193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915929935681025