Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2295 217 1e-51 seq2898 214 1e-50 seq1608 95.1 1e-14 seq2205 87.8 1e-12 >seq2295 Length=223346 Score = 217 bits (240), Expect = 1e-51 Identities = 349/493 (71%), Gaps = 19/493 (4%) Strand=Plus/Plus Query 103586 GGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGGGAGGAG 103645 |||||||| || ||||| ||||| || || |||||||| || |||||| | |||| || Sbjct 101663 GGCCGCGGAGATGAAGTACGCTGTGCATTCTGCAAAGTTGAAATTATGAGATGGGTCGAA 101722 Query 103646 GGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCCGTTCCTGaaaaaa 103705 ||||| || || || || |||||| | |||||||| || || || ||| | || Sbjct 101723 GGCGATGATCCCGCCAAGGACCATCAGCGTTGGGCGCCACAATGCCCATTCGTTCGCAA- 101781 Query 103706 aCGGCTGCTGGCG-CGCTGCCCGC-CGGCCTTGCGATGGACGGGCAG-GACGAGTGCGGC 103762 |||| |||| || ||| || ||| || | | | ||||| | |||||||||||| Sbjct 101782 ---GCTG--GGCGGCGGCGCCAGCACGGACTCGAGCGGCTCGGGCCGAGACGAGTGCGGC 101836 Query 103763 GTGAGCGCGCTGCCGTCCACCA-----ACGCCTGCGTGCGCATGCCCGGCCCCGCGCACC 103817 || ||||| |||| |||||| ||||| | ||||||| ||||||||| |||| Sbjct 101837 GT--CCGCGCGGCCG-CCACCAGCACCACGCC--CCCGCGCATGGCCGGCCCCGTACACC 101891 Query 103818 CTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAGTCTGA 103877 | || ||||| ||||| || | | || | | |||||| || ||||| || | || Sbjct 101892 CACGCTTCGCTTCCGAAGCTGCGCGTTTGCGCAGTTTTAAAGACTGGCCGCGATGCATGC 101951 Query 103878 AACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAGCGACAACA 103937 || ||||| ||| | | ||||| || || |||| ||||||||| || | || || | Sbjct 101952 GGCAAAAACCAGAGGAACTTGCCGAGGCTGGTTTCTTCTACACCGGTCAGGGGGATAAGA 102011 Query 103938 CGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCCGTGGC 103997 | || || ||||| ||||| || ||| | || || ||||| | ||||| | ||| ||| Sbjct 102012 CCAAGTGTTTCTATTGCGATGGCGGTTTGAAAGACTGGGAAAATGATGACGTGCCCTGGG 102071 Query 103998 AACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGCCACGATT 104057 |||| ||||||| | || || ||||| ||||||| || || ||||||| ||| | Sbjct 102072 AACAGCACGCGCGCTGGTTCGATCGCTGCGCCTACGTGCAGCTGGTGAAGGGCCGCGAGT 102131 Query 104058 ATGTACAAAAGGT 104070 | ||||| ||||| Sbjct 102132 ACGTACAGAAGGT 102144 >seq2898 Length=111689 Score = 214 bits (236), Expect = 1e-50 Identities = 826/1281 (64%), Gaps = 24/1281 (2%) Strand=Plus/Minus Query 28980 GTTGCGGACACGGACGGTGGCCATTTGTCTCCGCTGGAATACGTTTGGCGG-GAGAATAA 29038 ||||| || || |||||| |||| ||| | || |||| ||| | | ||| |||| || Sbjct 28476 GTTGCCGATACTGACGGTAGCCACTTGCCACCCTTGGACTAC-TCTATCGGAGAGAGGAA 28418 Query 29039 CAAGCC-TGGACGGCGCCAG--GACAAGACCGTCGCTGCGTATTTTGTAGAATGGGGCGT 29095 |||||| | | | | | | |||| || | || || || || ||||||||||| Sbjct 28417 CAAGCCCTTCAAGCAGACTTCTGGCAAGGTTGTTGGCGCTTACTTCGTCGAATGGGGCGT 28358 Query 29096 ATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTGCCCAACCTCTCGCATCTGTTGTA 29155 || | | || || || || ||| || || | || || || | ||||| |||| Sbjct 28357 CTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATCCCGAATCTTACCCATCTTCTGTA 28298 Query 29156 CGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTCAAAACCATTCCCGG 29215 ||||||||| || || ||||| || || || |||||||| | ||| || || Sbjct 28297 CGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAACGACAGTTTGAAAGAAATCGAAGG 28238 Query 29216 CAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGTTCAGATTTCAAAGTCGCTATTCA 29275 ||| || | || |||||||| || |||| ||| | || |||||||| | ||||| Sbjct 28237 CAGCTTCCAAGCTCTGCAACGATCCTGCAGTGGCAGGGAGGACTTCAAAGTATCGATTCA 28178 Query 29276 CGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCCTA 29335 ||| || ||||| || | || ||||| |||||||| || | | |||||||| ||||| Sbjct 28177 CGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGGTCTGGCGTCCTGGAACGAACCCTA 28118 Query 29336 CAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTGGCCAATCCGCACCTCAAAATTCT 29395 ||| || || ||||| ||||| ||| | || | ||| | || |||| || || | Sbjct 28117 CAAGGGTAATTTCGGACAGCTGATGATGTTGAAACAGGCAAGACCTGACCTGAAGATCTT 28058 Query 29396 GCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTCTATTTCATGCAC-GACGCGGAAA 29454 || ||| | || || ||||| || | || || |||| ||| | ||| ||| || | Sbjct 28057 ACCTTCCGTTGGTGGTTGGACCCTGGCTGATCCATTCTTCTTCTT-CACTGACAAGGTTA 27999 Query 29455 AACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCTGCAGGTGTGGAAGTTTTTTGACG 29514 | || || || ||||| || | || || || | ||||| || ||||| | Sbjct 27998 AGAGGAAGCGCTTCGTTGACTCTGTGAAGGACTTCCTTGAAACCTGGAAATTCTTTGATG 27939 Query 29515 GCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGGCGCCAACCCGACACTTGGCAACG 29574 | |||||||| ||||||||||| || ||||| || ||||| ||||| || || | | Sbjct 27938 GAGTGGACATTGACTGGGAGTTCCCTGGTGGTAAGGGCGCTAACCCTGATCTCGGTAGCC 27879 Query 29575 GGGAGCGCGACGCCGACACGTATAACATTTTACTAAAGGAATTGCGCGCAATGATGGACG 29634 || |||| ||| || | | | |||||| || | | ||| | ||| Sbjct 27878 CTGA---TGACGGTCACATCTACGTCGAGCTGATGAAGGAACTGAGAGAGATGCTTAACG 27822 Query 29635 AGTTACAATTGCAA-ACGGGCAAAACGTACGAGTTGACAAGCGCAATCAGTTCCGGACAT 29693 || | | ||| || || || | ||||| |||| || ||||| || || Sbjct 27821 AGCT-GTCTGCCAAGACTGGAAAGAAATACGAACTGACTTCAGCCATCAGCTCTGGTTGG 27763 Query 29694 GACAAGATTGCTGTAGTTAAATACGACGCTGCGCAAAAGTTTCTCGATAAAATATTCCTC 29753 ||||||||| ||||| | ||| | || || || ||| | || | || ||| | Sbjct 27762 GACAAGATTCAGGTAGTAGACTACAAAGCGGCTCAGCAGTACATGGACCACATCTTCTTG 27703 Query 29754 ATGAGCTACGATTTTAAAGGCGCGTGGTCAAACACCGATTTGGGCTACCAAACTACTCTC 29813 ||||||||||| || || || || ||||||||| | | | ||| ||||| || | || Sbjct 27702 ATGAGCTACGACTTCAAGGGAGCTTGGTCAAACGACACTCTTGGCCACCAAGCTGCCCTG 27643 Query 29814 TACGCGCCGAGTTGGAACCCAAACGA-ACTGTACAACACGGACCACGCCGTTAAGTTGCT 29872 |||| || |||||||| || || ||| |||| || ||| || || || || || Sbjct 27642 CACGCTCCCGCCTGGAACCCCAAGGAGACT-TACACAACTGACTTCGGTGTCAAATTCCT 27584 Query 29873 CACGAACCAGGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGCCATGTACGGCCGCGG 29932 | ||||| || ||| |||||| | || || || || ||||||||||| || Sbjct 27583 GTTGGCTCAGGGAGTCAGCCCTAAGAAAATTGTCGTTGGTGTAGCTATGTACGGCCGTGG 27524 Query 29933 TTGGACAGGCGTGTCGGGTTATGACGGTGACAACTATTTTACGGGCACAGCTGCTGGGCC 29992 |||||| || || ||||| | | | ||| || || || ||| |||| || Sbjct 27523 TTGGACTGGAGTCAACGGTTACAAAGACGGAAACCCATTCACTGGTGTAGCCACTGGCCC 27464 Query 29993 CGTGACCGGCACTTGGGAAGACGGCGTTGTCGACTATCGCCAAATTGAAAACGAAA---- 30048 || | || || ||| | || || || || ||||| | | || | ||||||| Sbjct 27463 GGTCAAAGGTACCTGGCAGGATGGTGTAGTGGACTACAGAGAGATAGCCAACGAAATTGC 27404 Query 30049 TGAA--CAAGTACATTTACAAATTTGACACGGCCGCTAAAGCAGCTTACGTTTTCAATAA 30106 | || ||||| ||| | | ||||| | ||| ||||| ||||||| || | || Sbjct 27403 TCAAGGCAAGTGGGAGTACCATTATGACAAAGTGGCTCAAGCACCTTACGTATTTAGGAA 27344 Query 30107 AGACAAGGGCGATTTAATCTCATTTGACAGTGTCGATTCTGTATTGGCAAAAAACAGCTA 30166 || | || || |||| ||| ||| || | || | | | || || || Sbjct 27343 GGAAACTGGTGACCTAATTACATATGATGATGCCAGATCGACAATTGAGAAGGCCAAATA 27284 Query 30167 CGTA--GATCGAAACGGATTGGGCGGATTATTCGCTTGGGAAATTGACGCCGACAACGGC 30224 ||| || | | | | || || | |||||||||||||| || || ||||| || Sbjct 27283 TGTAAGGAATAATAAG--CTAGGTGGTCTGTTCGCTTGGGAAATAGATGCAGACAATGGT 27226 Query 30225 GATTTGTTAAATGCTATGAAT 30245 ||| | ||||||| |||||| Sbjct 27225 GATATACTAAATGCCATGAAT 27205 >seq1608 Length=32450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| ||||| || || || ||||| || ||| | ||| ||| | Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | |||||| || ||| || ||||||||| | ||| ||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| || | || || || ||| | || |||| ||| || | |||||||| Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| ||||| || |||||| | ||| Sbjct 29571 CATCCAAAAAGAATCTACGCTTCAC 29595 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || ||||| | || || || || |||||| ||||| ||| || Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || || ||| ||| || |||||||| | || || ||| Sbjct 29680 GATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCAG 29739 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | ||| || || |||||||| || | || | | ||||||||| Sbjct 29740 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 29799 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || | ||| |||| || | ||||||| || Sbjct 29800 ATTCAAAAGGAATCCACCCTTCACCTGGTCCTGCGTCTGCGAGGTGG 29846 >seq2205 Length=656796 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 107540 TTATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGT 107599 |||| | || | || ||||||||| || || ||||| | || || || ||||| ||| | Sbjct 548733 TTATTACAGCTCTACAATGCAAATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCT 548792 Query 107600 CGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGG 107659 ||| ||||||| || ||| | | | || || ||||||| || ||||| || Sbjct 548793 CGAGGTGGAGGCTTCGGACACTATTGAGAATGTGAAGGCAAAGATTCAGGACAAAGAGGG 548852 Query 107660 CGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAAC 107719 | | || || ||||| | ||||| | || ||||||||| |||| || | | || Sbjct 548853 CATCCCGCCAGACCAGCAACGTCTTATCTTCGCCGGTAAACAGTTGGAAGATGGCCGCAC 548912 Query 107720 AATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGG 107779 | | | ||||||||||| || ||||| || || | ||| | ||| | || || |||| Sbjct 548913 ACTCTCAGACTACAACATCCAGAAGGAATCCACACTCCACTTAGTGCTTAGGCTGAGAGG 548972 Query 107780 GGGAAA 107785 || || Sbjct 548973 AGGTAA 548978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398862337599775