Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq806 127 3e-24 seq1608 96.9 5e-15 seq2205 84.2 3e-11 >seq806 Length=81131 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||||||||| || || ||||| || ||| | || || || | | | Sbjct 48635 TGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCTG 48576 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| ||||| || ||| || || || ||||| ||||| | Sbjct 48575 ACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCAGC 48516 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || ||||| || || ||| | || ||| |||| || |||| Sbjct 48515 AACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCAGACTACAATA 48456 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| || | || |||||||| || || | ||||| | ||||||| Sbjct 48455 TCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGAATGCAAATATT 48398 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| ||||||| ||||| || |||||||| ||| | || || || | | Sbjct 48407 TGCAAATATTCGTAAAAACTTTAACTGGTAAAACAATAACTTTAGAAGTTGAGCCGTCTG 48348 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| |||||||| ||| ||||| ||||| || || || | Sbjct 48347 ACACAATTGAAAATGTCAAAGCCAAAATACAGGATAAGGAAGGTATTCCCCCAGACCAGC 48288 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || ||||| ||||| ||||| ||| | || | | |||||||||| Sbjct 48287 AGCGACTGATCTTCGCAGGCAAACAGTTAGAGGATGGCCGCACTCTTTCTGATTATAATA 48228 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | || || || || ||| |||| || ||| Sbjct 48227 TCCAGAAGGAGTCAACTCTCCACTTGGTA 48199 Score = 116 bits (128), Expect = 6e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| ||||| | || || |||| | Sbjct 46097 TGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCTG 46038 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| ||||| ||| ||||| || |||||||| ||||||| Sbjct 46037 ACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAAC 45978 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || ||||| || | || || | || | | ||||| |||| Sbjct 45977 AAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAATA 45918 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||| ||||| || | |||||||| || | || ||||| || | |||| Sbjct 45917 TTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAATGTAAA 45864 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || || ||||| || || | || || |||| | Sbjct 48863 TGCAGATCTTTGTGAAGACTTTGACGGGGAAAACCATAACATTAGAGGTGGAACCCTCTG 48804 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || ||| ||||| ||| ||| ||||||||||| |||||||||| Sbjct 48803 ATACCATTGAAAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCTCCCGATCAAC 48744 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || || |||||||| || ||| | || | | || || |||| Sbjct 48743 AGAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGACGCACTCTTTCCGACTACAATA 48684 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || ||| | ||| | || | || | ||||| |||| Sbjct 48683 TCCAGAAGGAGTCTACTCTTCATCTCGTGCTGCGTCTCAGAGGTGGTA 48636 >seq1608 Length=32450 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || || ||||| || || |||| || || | || Sbjct 29393 TGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATCCG 29452 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||||||| ||||| ||| |||||||||||||| || ||||| | Sbjct 29453 ACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCAGC 29512 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || ||||| || | | || | | || || || | Sbjct 29513 AGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAACA 29572 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 29573 TCCAAAAAGAATCTAC 29588 >seq2205 Length=656796 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | || || || || || || | || || || | | Sbjct 546336 TGCAGATCTTCGTAAAAACCCTGACGGGTAAGACCATCACCCTCGAGGTGGAGGCTTCAG 546277 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | |||||||| ||||| || ||||| |||||||| || || || | Sbjct 546276 ACACTATTGAGAATGTAAAGGCAAAAATCCAGGACAAAGAGGGCATTCCGCCAGACCAGC 546217 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || |||||||| || || ||| | || | |||| ||||| | Sbjct 546216 AACGTCTTATCTTCGCCGGTAAACAGTTGGAAGATGGCCGCACTCTTTCAGACTATAACA 546157 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | ||||| ||||| ||| | || || || | | | ||||||||||| Sbjct 546156 TCCAAAAGGAATCCACTCTTCACTTGGTGCTCAGGCTGAGAGGAGGTAA 546108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786137164437000