Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2898 194 2e-44 seq806 136 4e-27 seq2205 134 1e-26 seq1608 131 2e-25 >seq2898 Length=111689 Score = 194 bits (214), Expect = 2e-44 Identities = 348/503 (69%), Gaps = 4/503 (1%) Strand=Plus/Plus Query 19020 GGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTC 19079 ||||||||||| || || || || |||||||| ||||| || || ||||| ||||||||| Sbjct 27893 GGGTTAGCGCCCTTACCACCAGGGAACTCCCAGTCAATGTCCACTCCATCAAAGAATTTC 27952 Query 19080 CACGTTTCTAGATACTCTTGGACTGAATCGATAAACGTCTGCCGTACGATCTTGTC-GTG 19138 || ||||| || | || | || || || | || || || | |||||| ||| Sbjct 27953 CAGGTTTCAAGGAAGTCCTTCACAGAGTCAACGAAGCGCTTCCTCTTAACCTTGTCAGTG 28012 Query 19139 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19198 | | | | ||||| || | || ||||| || || | ||||||| | || || | Sbjct 28013 AAGAAGA-AGAATGGATCAGCCAGGGTCCAACCACCAACGGAAGGTAAGATCTTCAGGTC 28071 Query 19199 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19258 ||| | ||| ||| ||| || || || || || || ||||| ||||||||||| Sbjct 28072 AGGTCTTGCCTGTTTCAACATCATCAGCTGTCCGAAATTACCCTTGTAGGGTTCGTTCCA 28131 Query 19259 TG-CGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTT 19317 | ||| | ||| ||||| |||||||| | || |||||||| |||||||| | |||| Sbjct 28132 GGACGC-CAGACCCTTTTGTGGTTTCTGAAGAGCTGCCCAAGGGTCGTGAATCGATACTT 28190 Query 19318 TGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTT 19377 ||||||| | | || || || ||||||| |||| ||| ||||| || || Sbjct 28191 TGAAGTCCTCCCTGCCACTGCAGGATCGTTGCAGAGCTTGGAAGCTGCCTTCGATTTCTT 28250 Query 19378 TGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCG 19437 | | || |||||||| || |||||||| || || | ||||||||||| | ||| | Sbjct 28251 TCAAACTGTCGTTGATGCCATCTCCACCGCAGATTGGGATGAAACCGTACAGAAGATGGG 28310 Query 19438 ACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGA 19497 | ||||| |||| || |||||||| |||| | || || || |||||||||| Sbjct 28311 TAAGATTCGGGATGGGTACGCGGTCGACGGGGAACTTCCTGGGGTAGACGCCCCATTCGA 28370 Query 19498 CAAAGTATGCACCTATAATCTTG 19520 | ||||| || || | || |||| Sbjct 28371 CGAAGTAAGCGCCAACAACCTTG 28393 >seq806 Length=81131 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || |||||||| ||||| |||| |||||||||||||| || ||||| || Sbjct 48410 CCTCCGCGCAAACGCAATACTAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCTGAT 48469 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || | ||||| | ||||| || ||| |||||| ||||||||||| || || Sbjct 48470 AATGTGCGTCCA-TCTTCCAACTGTTTGCCGGCAAAGATCAATCGTTGCTGATCAGGTGG 48528 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || || || ||||| ||| | | ||| | ||||| | || || || Sbjct 48529 GATACCCTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATTGTGTCAGAAGGCTCAAC 48588 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || ||||| ||||||||||||||||| ||||||||| Sbjct 48589 CTCTAAAGTGATGGTTTTGCCAGTCAATGTTTTTACGAAAATTTGCATA 48637 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||||||||||| ||| ||||| ||||| || ||||||||| | |||| |||||| Sbjct 45889 AACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAAAGAGTGCGTCCGTCTTC 45948 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 || || |||||||| | |||| | ||| ||||| || || || || |||||||| Sbjct 45949 AAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGAATTCCCTCTTTGTCTTG 46008 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||||| ||| | | ||| | ||||| | |||||| ||||| | || | || || Sbjct 46009 AATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAACTTCTAATGTAATGGTTTT 46068 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || ||||| || || |||||||| Sbjct 46069 ACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||||| || | ||||| ||||| || || || || ||||| ||| Sbjct 48638 CCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 48697 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| | |||||| || || |||||| | || ||||||||||| Sbjct 48698 AGAGTGCGTCCA-TCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGG 48756 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| || || ||||||| ||| | | ||| | || || | |||||| || Sbjct 48757 AATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCAC 48816 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || ||||| || || || || || ||||| Sbjct 48817 CTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 48864 >seq2205 Length=656796 Score = 134 bits (148), Expect = 1e-26 Identities = 307/456 (67%), Gaps = 7/456 (2%) Strand=Plus/Plus Query 151005 AACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGG 151064 ||||||| || || || ||| ||| | |||||| ||||||| ||| ||| || | Sbjct 19822 AACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATTG 19881 Query 151065 CAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGC 151124 | || || || |||| ||||| |||| | |||||||||||| || || ||||| | | Sbjct 19882 CTGCCTCACTTTCGTAAGGTATACGCATTAAAACAAATGCATCAGCTAATCCTTGGACTC 19941 Query 151125 CTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAAT 151184 | || |||||||| || || | |||||| || |||||||| | | ||||| ||| Sbjct 19942 CAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAAT 20001 Query 151185 TGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAA-TAGT 151243 | ||||||||||||||| | | | | || | || || | || | | Sbjct 20002 TTACATCAATAATTTTATTTAGATTCTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGG 20061 Query 151244 TGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTA 151300 || |||| | | | | || | ||| | | | |||| | ||||| || |||||||| Sbjct 20062 TG-AAATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGATTG 20120 Query 151301 CATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 151360 || || || ||| || | | | |||| ||| ||||| | ||||| ||||||||| Sbjct 20121 CACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCAT 20180 Query 151361 TTTATCAATCCGCAA-TTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 151419 || || | | | ||| || |||| |||||||| | ||||| | || || || | ||| Sbjct 20181 TTAAT-AGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCAT 20239 Query 151420 GTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 151455 ||| || || || ||||| |||| ||| ||||| Sbjct 20240 GTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAAT 20275 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 ||||| || | ||| ||||| || || |||||||| || | ||||| ||||| Sbjct 548957 ACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCTTCC 548898 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||||| || |||| ||||||||||| || || || ||||| |||||||| | Sbjct 548897 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCCCTCTTTGTCCTGA 548838 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || ||| || | | || | ||||| | | || || || | || | ||||| Sbjct 548837 ATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCACCTCGAGGGTGATGGTCTTA 548778 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || |||| ||||||||||| |||||||| Sbjct 548777 CCCGTCAGGGTTTTTACGAAGATTTGCAT 548749 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || |||| || ||||| ||||| ||||| || || | |||| ||||| Sbjct 546129 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGAAAGAGTGCGGCCATCTTCC 546188 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||||| || |||| ||||||||||| || || || ||||| |||||||| Sbjct 546189 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGAATGCCCTCTTTGTCCTGG 546248 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 |||||| |||| | || | ||||||| | || || || | || | ||||| Sbjct 546249 ATTTTTGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTCTTA 546308 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || |||| ||||||||||| || ||||| Sbjct 546309 CCCGTCAGGGTTTTTACGAAGATCTGCAT 546337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || || | ||| ||||| || || |||||||| | | | |||| ||||| Sbjct 562494 ACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTGTGAGAGTGCGGCCATCTTCC 562435 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||||| || |||| ||||||||||| || || || |||| |||||||| | Sbjct 562434 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCTCTCTTTGTCCTGA 562375 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || ||| || | | || | ||||||| | || ||||| | | | ||||| Sbjct 562374 ATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACTTCGAGGGCGATAGTCTTA 562315 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || |||| ||||||||||| |||||||| Sbjct 562314 CCCGTCAGGGTTTTTACGAAGATTTGCAT 562286 >seq1608 Length=32450 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | |||| |||||||||||||| |||||||| || | Sbjct 29618 CCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 29559 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| |||||| | || || ||||| ||||||| || |||||||| || || Sbjct 29558 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 29499 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| |||||| ||||| | ||| | ||||| | || || ||| Sbjct 29498 ATGCCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAACT 29439 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || ||||| ||||| || || || ||||| Sbjct 29438 TCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCAT 29392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||||| || | |||| || ||||| ||||| |||||||| || Sbjct 29846 CCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGAG 29787 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| | ||||| || || || || ||| ||||||| | |||||| || || || Sbjct 29786 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 29727 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||||| || | | || | || |||| || || ||| Sbjct 29726 ATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATAGTATCTGAAGGCTCGACT 29667 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || || | ||||| ||||| || |||||| Sbjct 29666 TCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCATA 29619 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||||| || || |||| ||||||||||| || ||||||||||| Sbjct 30758 CCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAA 30699 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| || || || |||||| |||| ||||| ||||| || || || Sbjct 30698 AGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 30639 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || ||||| || ||| || ||| | | || | ||||| | || || ||| Sbjct 30638 ATTCCCTCTTTATCTTGAATCTTAGCTTTCACATTCTCAATAGTGTCAGAAGGCTCCACT 30579 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | || || || || | || || ||||| || |||||| Sbjct 30578 TCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCATA 30531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488525832270000