Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2205 210 5e-49 seq1747 84.2 5e-11 >seq2205 Length=656796 Score = 210 bits (232), Expect = 5e-49 Identities = 476/700 (68%), Gaps = 23/700 (3%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| | ||| || || || |||| |||| || |||||| |||| |||||| Sbjct 20854 CATGCAAGTCCAACTCTTTTCTCAGCAGCAACTCCACGACCACAATTATCTTCATGCTTT 20795 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 ||| ||| ||| | |||||| ||||| || |||||||| | | ||| || ||| Sbjct 20794 CTTATAGCAATGAGGGATGATAGCATTGAGGGAATTTATGACACGTTAAAACAATGTGCC 20735 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA 110648 || |||||||| |||| || || ||| |||| || || ||| | |||| ||| Sbjct 20734 CTCATTTCTAAGTCAGCTGGTGGGATAGGTCTTCATGTACACTGCATTAGAGCAAAGGGA 20675 Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708 | |||| || | || |||| || | ||| || || || ||||||||||| | | Sbjct 20674 ACTTATATAGCTGGTACAAATGGTGTCTCTAATGGTCTAGTACCCATGTTAAGAGTTTAC 20615 Query 110709 AACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATC 110765 ||| ||||||| |||||| | ||||| || ||| ||| ||| ||||||| || Sbjct 20614 AACAACACTGCTCGATATGTAGACCAAGGAGGTAATAAAAGACCCGGCGCATTTGCCATA 20555 Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA-ATCA-AG 110823 || | ||||| |||||| | ||||||||||||||| | || || | |||| | || | Sbjct 20554 TACTTAGAACCATGGCATGCTGATATATTTGAATTCCTTGA--TTTGAAAAAGAACACTG 20497 Query 110824 GATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 | |||||| | || | || |||| ||||| | ||||| | || || |||| Sbjct 20496 GGAAAGAAGAAGTCCGTGCCAGAGAGCTATTCTATGCTTTATGGATACCTGACTTGTTCA 20437 Query 110884 TGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGG 110941 ||||| | || || ||| || | ||| | | ||||| || ||| | |||||| Sbjct 20436 TGAAAAGAGTAGAAAGCAAT--CAAGATTGGAGTATCATGTGCCCCCATGAATGTCCTGG 20379 Query 110942 TCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAG 111000 ||| | || ||| | || | || ||||||| | || || ||||||||||||| || Sbjct 20378 ACTAGCAGACTGT-TGGGGTGAGGAATTTGAAGCTTTGTATGAGAAATATGAAAAAG-AG 20321 Query 111001 GCAAGTTTCG-CAAACAAATTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCA 111056 | | |||| |||||| | |||||||| |||||| ||| || | ||| || Sbjct 20320 GGTCGCTTCGTGAAACAAGTGAGAGCTCAAGTTCTTTGG---AAAGCTATTATCGAAGCA 20264 Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGCAAATCTAA 111115 ||||||||||| |||||||| || || | |||||||| |||| ||| | ||| || Sbjct 20263 CAAGTTGAAACAGGAACTCCATACATGCTTTATAAAGATTCAT-GCAATAGAAAAAGCAA 20205 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||| ||| || || || ||||| | || || |||||| Sbjct 20204 CCAAAAGAACTTGGGTACTATTAAATGCAGCAACTTGTGC 20165 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| || || ||| || | || ||||||||||||||||| || || ||| Sbjct 20049 AAGTTACTAAGACTATAACTCAGAATCTAAATAAAATTATTGATGTAAATTATTACCCAG 19990 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | | |||||| | || |||| | ||| |||| || || ||||| || ||||||| Sbjct 19989 TGCCAGAGGCAAAAAACTCAAATATGAGGCACCGACCCATCGGAATTGGAGTCCAAGGAT 19930 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATT--CTT 112753 ||||||||| |||| | | ||||| || |||| || ||| || |||| || Sbjct 19929 TAGCTGATGCATTTGTTTTAATGCGTATACCTTACGAAAGTGAGGCAGC--AATTAAATT 19872 Query 112754 AAATGAAAAGATTTTCGAAACAATCTATT 112782 |||| || | || || |||||||| |||| Sbjct 19871 AAATCAACAAATATTTGAAACAATTTATT 19843 >seq1747 Length=714427 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 278204 ATGATATTTGGGAATTTATTGACATCTACTAATTACAAGGAAGATGAAGAGCGACTCACA 278263 ||||| ||||| ||||||||||||| | || ||||| || || ||||| | | ||| Sbjct 223329 ATGATTTTTGGACATTTATTGACATCATCAAACTACAATGATGAAGAAGAAAAAGTGACA 223388 Query 278264 GGAGGCAAAAATGGATATGGGGCAAAGCTGACAAATATCTTCTC 278307 ||||||| |||||||||||| ||||| ||| ||||| || || Sbjct 223389 GGAGGCAGAAATGGATATGGTGCAAAACTGTGTAATATATTTTC 223432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186767562033975