Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1608 127 1e-24 seq806 127 1e-24 seq2205 109 4e-19 >seq1608 Length=32450 Score = 127 bits (140), Expect = 1e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| |||||||| || || |||||||| |||| || || || ||||| || || Sbjct 29582 TCTTTTTGGATGTTGTAGTCAGACAGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAG 29523 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||||||| | || | ||||||||||| |||||| | || |||| Sbjct 29522 ATCAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATTTT-GGCTTTTACATT 29464 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || || || |||| ||||| |||||||| || || ||||| || Sbjct 29463 TTCAATAGTGTCGGATGGCTCAACTTCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCAC 29404 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 29403 AAAAATCTGCAT 29392 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | |||| || || ||| || ||||| |||||||| || || Sbjct 29847 ACCACCTCGCAGACGCAGGACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCAGA 29788 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || |||||||| |||| | ||||| ||| | || Sbjct 29787 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGG 29728 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| || | ||||| || | || || | || | Sbjct 29727 GATACCTTCTTTGTCTTGAATTTT-TGCCTTAACATTCTCGATAGTATCTGAAGGCTCGA 29669 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || ||||| || | |||||| || || ||||||||| Sbjct 29668 CTTCGAGGGTAATTGTCTTACCAGTAAGCGTTTTAACGAAAATCTGCATA 29619 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||||| || || || ||||| || ||||||||||| || Sbjct 30759 ACCACCTCGCAGACGCAGGACCAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGA 30700 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || || ||||| || | ||||||||| ||| | || Sbjct 30699 AAGGGTACGCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 30640 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||| || |||| |||| || | ||||| | |||| Sbjct 30639 AATTCCCTCTTTATCTTGAATCTTAGCTTTC-ACATTCTCAATAGTGTCAGAAGGCTCCA 30581 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| |||||||| || | || || || || ||||||||| Sbjct 30580 CTTCAAGAGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATCTGCATA 30531 >seq806 Length=81131 Score = 127 bits (140), Expect = 1e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||| | ||| ||||| ||| || || || ||||| ||||| Sbjct 48637 ACCACCTCTGAGACGCAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGA 48696 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||||||||||||||| || ||||| | ||| ||||| | || Sbjct 48697 AAGAGTGCGTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGG 48756 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| || || ||| | || | ||| || | ||||| Sbjct 48757 AATGCCTTCCTTATCTTGAATTTT-TGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCA 48815 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | || || ||||| || || || || || |||||||||||||| |||| Sbjct 48816 CCTCTAATGTTATGGTTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT-GTTG 48868 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| | || || ||||| || || || ||||| || ||||||||||| Sbjct 45872 CCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGGAA 45931 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| || | || || || || |||||||| | || |||||| | || Sbjct 45932 AGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTGGA 45991 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| |||||| | || |||| || | ||||| | ||| || Sbjct 45992 ATTCCCTCTTTGTCTTGAATTTT-GGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAAC 46050 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 46051 TTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 >seq2205 Length=656796 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| | | |||||| || |||||| || ||||| ||||| || || || Sbjct 546110 ACCTCCTCTCAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTTTGGATGTTATAGTCTGA 546169 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| ||||| ||||| || || | ||| ||||| ||| |||| Sbjct 546170 AAGAGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGG 546229 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || |||||||| ||||| || | |||| ||| ||||| | |||| Sbjct 546230 AATGCCCTCTTTGTCCTGGATTTT-TGCCTTTACATTCTCAATAGTGTCTGAAGCCTCCA 546288 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || ||||| || | |||||||| ||||||||||| || Sbjct 546289 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATCTGCATTGT 546340 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| | | ||| || || || ||| || || || |||||||| || || Sbjct 548976 ACCTCCTCTCAGCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGA 548917 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || ||||| ||||| ||||| || || | ||| ||||| ||| |||| Sbjct 548916 GAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGG 548857 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||| || || | |||| || | ||||| | |||| Sbjct 548856 GATGCCCTCTTTGTCCTGAATCTT-TGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCA 548798 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| || ||||| || | |||||||| ||||| ||||| || Sbjct 548797 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCATTGT 548746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692081912000