Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2898 235 5e-57 seq2205 187 2e-42 seq806 131 1e-25 seq1608 100 3e-16 >seq2898 Length=111689 Score = 235 bits (260), Expect = 5e-57 Identities = 812/1251 (65%), Gaps = 39/1251 (3%) Strand=Plus/Minus Query 59892 GAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGAATG 59951 |||| |||||||| ||| || | ||| || || |||| ||| || || |||||||| Sbjct 28420 GAACAAGCCCTTC--AAGCAGACTTCTGGC-AAGGTTGTTGGCGCTTACTTCGTCGAATG 28364 Query 59952 GGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGCATAT 60011 ||| || || || || || || || || || || || |||| || ||||| | ||| | Sbjct 28363 GGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCATCCCGAATCTTACCCATCT 28304 Query 60012 TCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAACCAT 60071 ||| ||||| || || || || ||||| || || || |||||||||||| | ||| || Sbjct 28303 TCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAACGACAGTTTGAAAGAAAT 28244 Query 60072 AACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAGTATC 60131 || || ||| |||| || || ||||| || || | || ||||| |||||||| Sbjct 28243 CGAAGGCAGCTTCCAAGCTCTGCAACGATCCTGCAGTGGCAGGGAGGACTTCAAAGTATC 28184 Query 60132 AATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGAACGA 60191 |||||||| || ||||| || | |||||||| ||||| | | | |||||||| Sbjct 28183 GATTCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGGTCTGGCGTCCTGGAACGA 28124 Query 60192 ACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACATCAA 60251 ||| ||||| |||||||||||||| | ||| |||| ||||| || || | || Sbjct 28123 ACCCTACAAGGGTAATTTCGGACAGCTGATGATGTTGAAACAGGCAAGACCTGACCTGAA 28064 Query 60252 AGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCAC-GATA 60310 | || || || | || |||||||| || | ||||| ||||| | | ||||| || | Sbjct 28063 GATCTTACCTTCCGTTGGTGGTTGGACCCTGGCTGATCCATTCTTCTTC-TTCACTGACA 28005 Query 60311 CGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTT 60370 || ||| | ||| || || || ||||| ||| || || | || |||||||| | Sbjct 28004 AGGTTAAGAGGAAGCGCTTCGTTGACTCTGTGAAGGACTTCCTTGAAACCTGGAAATTCT 27945 Query 60371 TCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCCCAACGTAG 60430 | || || || ||||| ||||||||||| || || || || || || || || | | | Sbjct 27944 TTGATGGAGTGGACATTGACTGGGAGTTCCCTGGTGGTAAGGGCGCTAACCCTGATCTCG 27885 Query 60431 GCGACGCCGAACGCGATCGCGAAACGTACACCATTCTGTTGAAAGATTTACGCGAGGCGC 60490 | | | || || || | | ||| | ||| |||| || | | ||| || Sbjct 27884 GTAGCCCTGATGACGGTC---ACATCTACGTCGAGCTGATGAAGGAACTGAGAGAGATGC 27828 Query 60491 TAGATCGATTAACCCTCGAAACGAATCGAACG---TACGAGTTGACCAGCGCAATTAGCG 60547 | | ||| | | || || | ||| | ||||| |||| || || ||| Sbjct 27827 T-TAACGAGCTGTCTGCCAA--GACTGGAAAGAAATACGAACTGACTTCAGCCATCAGCT 27771 Query 60548 CCGGCGATGACAAAATCGCCGTCGTCGACTACACCGCTGCTCAAGAATATTTAGATTTAA 60607 | || ||||| || || || ||||||| || ||||| | || | || | Sbjct 27770 CTGGTTGGGACAAGATTCAGGTAGTAGACTACAAAGCGGCTCAGCAGTACATGGACCACA 27711 Query 60608 tttttttGATGACGTACGATTTTAAAGGAGCCTGGTCGAATAACGATCTGGGCTATCAGA 60667 | || ||||||| ||||| || || ||||| ||||| || || ||| ||| | || Sbjct 27710 TCTTCTTGATGAGCTACGACTTCAAGGGAGCTTGGTCAAACGACACTCTTGGCCACCAAG 27651 Query 60668 CTACTCTATACGCTCCTTCGTTTAATCCTAAAGAACATTATACTACCGATTT---TGCC- 60723 || | || ||||||| | | || || || || ||| || || || || || | Sbjct 27650 CTGCCCTGCACGCTCCCGCCTGGAACCCCAAGGAGACTTACACAACTGACTTCGGTGTCA 27591 Query 60724 -GTTCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaaaaaaTTATTGTCGGCGTGGCCAT 60782 ||| || | |||| | |||| ||| |||||| | || || || || || Sbjct 27590 AATTCCTG-TTGGCTCAGG----GAGTCAGCCCTAAGAAAATTGTCGTTGGTGTAGCTAT 27536 Query 60783 GTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTGACGATAATAATCCATTTTCCGG 60842 |||||| || || ||||| || || | || || |||| || ||||| | || Sbjct 27535 GTACGGCCGTGGTTGGACTGGAGTCAACGGTTACAAAGACG---GAAACCCATTCACTGG 27479 Query 60843 AACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACGGAGTCGTCGACTATAGAGAGAT 60902 |||| || ||||||||||| || ||| | || || || || ||||| |||||||| Sbjct 27478 TGTAGCCACTGGCCCGGTCAAAGGTACCTGGCAGGATGGTGTAGTGGACTACAGAGAGAT 27419 Query 60903 TTTCAA-TAATTTCGTC--GCCAATAACCCGATGGAAT---ATTACGATTCCGTTGCAAA 60956 ||| || || || | ||| | ||| | |||| || || || | Sbjct 27418 AGCCAACGAAATTGCTCAAGGCAA------GTGGGAGTACCATTATGACAAAGTGGCTCA 27365 Query 60957 AGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCTCATCACTTACGACAATCCTCGGTC 61016 ||| | ||||| |||| || || || || || || || || || || | | || Sbjct 27364 AGCACCTTACGTATTTAGGAAGGAAACTGGTGACCTAATTACATATGATGATGCCAGATC 27305 Query 61017 GGTTCTGGATAAAGCAAAATATGTATTGGACTATAGCTTGGGTGGTTTGTTCGCTTGGGA 61076 | | || || || ||||||||| | | ||| | |||||| ||||||||||||| Sbjct 27304 GACAATTGAGAAGGCCAAATATGTAAGGAATAATAAGCTAGGTGGTCTGTTCGCTTGGGA 27245 Query 61077 GATCGACGCCGACAACGGATTACTTCTAAACGCCATGAACAGCGGTCTCGG 61127 || || || ||||| || | ||||| |||||||| | ||||| || Sbjct 27244 AATAGATGCAGACAATGGTGATATACTAAATGCCATGAATATGGGTCTTGG 27194 >seq2205 Length=656796 Score = 187 bits (206), Expect = 2e-42 Identities = 708/1088 (65%), Gaps = 36/1088 (3%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || ||||| ||||| | ||| ||||| || || || | | ||||||||| ||||| ||| Sbjct 19197 ACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTT 19256 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 || ||| | | ||| | ||| ||| ||||||| ||| | ||| | || || || Sbjct 19257 AAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGGTTCAGCA 19316 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || ||| | |||||||||||||| || | | || | ||| || ||||| || Sbjct 19317 ACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCAT-TTG 19375 Query 136819 AATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 || || ||||| | | | |||||| | |||||| | | ||| | | || || Sbjct 19376 TATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTTTAGG 19435 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGAT---TTTCATCATGAGATC 136934 |||| | || ||||| || | |||||| || || | |||||| || |||| || Sbjct 19436 AATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCATATCTTC 19495 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTT---TATCG-ACGAGATGCTGATTTACTACTT 136990 | || || | || | |||| | ||| | | ||| ||||| || |||| Sbjct 19496 A-TCCCATAAA------TCAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTT 19548 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 | |||| || || | |||| | | || | || ||| || || || || |||| Sbjct 19549 GGAATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATT 19608 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | || || ||||| || || ||||| | || || ||||| ||| | || | |||| Sbjct 19609 CATTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAAT 19668 Query 137111 TCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 | | | ||| ||| ||| | || || ||||| ||| ||||||| || | Sbjct 19669 TTCTAAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACA---AGTCTG 19725 Query 137171 ATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 ||||| ||||||||| |||| | ||||| | || |||| ||||||| || ||| Sbjct 19726 TGGGGGTTTTATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCAT 19785 Query 137231 AAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGT 137290 ||| ||||| || | | | || | ||| ||| ||||||| ||||| | Sbjct 19786 AAGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAAT 19845 Query 137291 AAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATAT 137350 |||| ||||| | |||| | ||| |||| | ||| | | || ||||| || ||| Sbjct 19846 AAATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAGGTATAC 19905 Query 137351 CCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAA 137410 || || | | || ||||| || | |||||| | || || ||||| |||| ||| | | Sbjct 19906 GCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCA 19965 Query 137411 AATTTGA-TATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGA 137469 |||||| | ||| | || | | || ||| | ||| | || |||||| |||| ||| Sbjct 19966 TATTTGAGTTTTTTGCCTCTGGC-ACTGGGTAATAATTTACATCAATAATTTTATTTAGA 20024 Query 137470 TTGTTAG-TAACGACTCTGGACACTTTGTAGAGCAATT--CGAAATCGAAGCTTTTAGAC 137526 || | || || | || | | |||| | | | || ||||| | |||| Sbjct 20025 TTCTGAGTTATAGTCT-TAGTAACTTCCTTTA--ATTTGGTGAAATTATATGTTTT---G 20078 Query 137527 TGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC-TGT 137585 | | || |||| |||| | ||||| || |||| ||||| || ||| ||| | | Sbjct 20079 TCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCT 20138 Query 137586 ATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATT 137645 || | |||||| ||||||||| | ||| | |||||| | || ||||| || Sbjct 20139 GATG-AGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTT 20197 Query 137646 CTTTTGATTG-TTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCGGTT 137703 |||||| ||| ||||||| ||| | || ||||||||| | ||| || |||||||| ||| Sbjct 20198 CTTTTGGTTGCTTTTTCT-ATTG-CATGAATCTTTATAAAGCATGTATGGAGTTCCTGTT 20255 Query 137704 TCGACTTG 137711 || ||||| Sbjct 20256 TCAACTTG 20263 >seq806 Length=81131 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| ||||| || ||| | || || | ||||| ||| || Sbjct 46099 CATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTC 46040 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| || |||||||| || || || ||||| Sbjct 46039 TGACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCA 45980 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| || || || || || ||||| | | | | | ||||||||| Sbjct 45979 ACAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAA 45920 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||| ||||| || |||||||||| |||| |||||||| |||| Sbjct 45919 TATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGAA 45870 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||||| || || ||| | ||||| | || || | |||| | Sbjct 48636 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTG-AGCCTTC 48578 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||| ||||| |||||||| || || ||||| Sbjct 48577 TGACACAATCGAAAATGTTAAAGCCAAAATCCAGGATAAGGAGGGTATCCCACCTGATCA 48518 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 |||| || | || | | ||||||||| | ||||||| | | | ||| || ||| Sbjct 48517 GCAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCA--GACTAC 48460 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||||||||| ||| |||| ||||| || | ||| | ||||||| Sbjct 48459 AATATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGAA 48408 >seq1608 Length=32450 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || || | || || |||||||||| ||| | Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGA-GCCTTC 29678 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||||||| | || || ||||||| || ||||| ||||| || || || || Sbjct 29679 AGATACTATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATCCCACCAGACCA 29738 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| || || | | |||||| || || ||||||| | | || || ||||| Sbjct 29739 GCAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 29798 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 |||||||| ||||||||| |||| Sbjct 29799 CATTCAAAAGGAATCCACCCTTCA 29822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445077848052000