Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2295 127 2e-24 seq806 96.9 3e-15 seq1608 84.2 2e-11 >seq2295 Length=223346 Score = 127 bits (140), Expect = 2e-24 Identities = 202/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 99851 ATGTCCGGCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTG 99910 ||| |||||||||| ||||| | || | || |||| ||||| | |||| Sbjct 101873 ATGGCCGGCCCCGTACACCCACGCTTCGCTTCCGAAGCTGCGCGTTTGCGCAGTTTTAAA 101932 Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||||| | || |||||||||||| || | ||||| || ||||| | ||| Sbjct 101933 GACTGGCCGCGATGCATGCGGCAAAAACCAGAGGAACTTGCCGAGGCTGGTTTCTTCTAC 101992 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 ||||| | || || || || ||||| ||||||| ||||| | |||||||||||| Sbjct 101993 ACCGGTCAGGGGGATAAGACCAAGTGTTTCTATTGCGATGGCGGTTTGAAAGACTGGGAA 102052 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGG 100090 | |||| ||| ||| | | ||||| || ||||| ||||||||| | ||||||| | Sbjct 102053 AATGATGACGTGCCCTGGGAACAGCACGCGCGCTGGTTCGATCGCTGCGCCTACGTGCAG 102112 Query 100091 CTTGTAAAGGGTTACGACTACGTGCAGCGCGTGCTTAGCGAAGCGTGCGT 100140 || || ||||| ||| ||||| ||| ||| | ||| || ||||| Sbjct 102113 CTGGTGAAGGGCCGCGAGTACGTACAGAAGGTGATGTCCGAGGCCTGCGT 102162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 || || ||||||||| | || |||| || ||||| ||||| || || |||||||||||| Sbjct 101645 AATGGATTTTATTATCTTGGCCGCGGAGATGAAGTACGCTGTGCATTCTGCAAAGTTGAA 101704 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||| | ||| | || ||||| || || || || ||| | || |||||||| ||| Sbjct 101705 ATTATGAGATGGGTCGAAGGCGATGATCCCGCCAAGGACCATCAGCGTTGGGCGCCACAA 101764 Query 99758 TGCCCGTT 99765 ||||| || Sbjct 101765 TGCCCATT 101772 >seq806 Length=81131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| || ||||| || |||||||| | ||| |||||| Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| |||||||| || | || |||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || || || | ||||| ||| | ||||||||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||| ||||| ||||| |||||||| | ||||| |||| ||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGA 45871 >seq1608 Length=32450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| |||||||| ||||| ||||| || || || || ||| | ||| || || Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| |||||| |||||||||||| | ||| ||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | || || | || || || || |||||||| | || || || ||||| Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| |||||||||||||| || || Sbjct 29571 CATCCAAAAAGAATCTACGCTTCA 29594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402315012408800