Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1608 107 2e-18 seq806 107 2e-18 seq2205 82.4 7e-11 >seq1608 Length=32450 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | ||| ||||| |||||||| || |||| Sbjct 30986 CCACCACGCAGACGCAAAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30927 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || |||||||||||||| || || || | ||||||||||| | ||| Sbjct 30926 AGGGTACGCCCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 30867 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||| | | || | | || || | ||| || Sbjct 30866 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTATCAGATGGTTCAACT 30807 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| |||||||| || | || ||||| || || ||||| Sbjct 30806 TCTAAGGTGATGGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30760 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || || | || | |||| || ||||| |||||||| || | | Sbjct 29618 CCACCACGGAGACGCAGAACAAGGTGAAGCGTAGATTCTTTTTGGATGTTGTAGTCAGAC 29559 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || | |||||| || || || |||| |||||||| || | ||| Sbjct 29558 AGTGTGCGACCGTCTTCTAACTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGGGGA 29499 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || ||||| ||| ||| |||| | | || | | |||||| | || || Sbjct 29498 ATGCCTTCTTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTGTCGGATGGCTCAAC 29440 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| |||||||||||||| ||||||||||| ||||||||| || Sbjct 29439 TTCAAGGGTGATAGTTTTACCCGTCAAGGTTTTCACAAAAATCTGCATTATG 29388 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| |||||||| || ||| ||| || ||||||||||| || | Sbjct 31214 CCACCTCGCAGACGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAA 31155 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || || | ||||||||||| | ||| Sbjct 31154 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31095 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | ||||| | ||||| Sbjct 31094 ATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACT 31035 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| |||||||| || | || ||||| || || ||||| Sbjct 31034 TCAAGAGTGATAGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| ||||| || | ||| ||||| |||||||| || |||| Sbjct 30074 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30015 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 30014 AGGGTACGCCCATCTTCAAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCTGGGGGA 29955 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| ||| |||||| ||| | | | | | ||||| | || || Sbjct 29954 ATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCAACT 29895 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 29894 TCAAGAGTGATGGTTTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 29848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| |||||||| | || ||| || ||||||||||| || | Sbjct 31442 CCACCTCGCAGACGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAA 31383 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| ||| | || || ||||| || || || || || | ||||||||||| | ||| Sbjct 31382 AGGGTACGCCCATCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 31323 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| ||| | | || | | || || | || || Sbjct 31322 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCGACT 31263 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 31262 TCGAGGGTGATAGTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31216 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| ||||| || | ||| ||||| |||||||| || |||| Sbjct 30530 CCACCTCGCAGACGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAA 30471 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 30470 AGAGTGCGTCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 30411 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||| || ||| | || | | || ||| | ||||| Sbjct 30410 ATTCCTTCCTTGTCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACT 30351 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || ||||| || || || || |||||||| Sbjct 30350 TCAAGGGTGATAGTTTTTCCAGTCAATGTCTTTACGAAAATCTGCAT 30304 >seq806 Length=81131 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | ||||| || | || ||||| ||||| |||||||| | | Sbjct 47954 CCACCACGTAGACGAAGTACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 48013 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||||| | || |||| ||||| || || || ||||| ||||| ||||| | ||| Sbjct 48014 AAGGTTCGCCCATCCTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 48073 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| ||| |||| | | || | | ||||| | ||| || Sbjct 48074 ATACCTTCCTTGTCC-TGAATTTTAGCTTTGACATTTTCAATTGTGTCAGAGGGTTCAAC 48132 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || ||||||||||| || || || ||||| Sbjct 48133 TTCTAGTGTGATAGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | ||||| | || ||||| | || ||||||||||| |||||||||| Sbjct 45870 TTCCACCTCTCAACCTTAGAACTAAATGAAGTGTTGATTCCTTTTGAATATTGTAATCGG 45929 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || ||||||||||| || || ||||| | || || || | | Sbjct 45930 AAAGAGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAAATCAATCTTTGTTGATCTGGTG 45989 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||| |||| | ||| ||| || || | | || | | ||||| | ||| Sbjct 45990 GAATTCCCTCTTTGT-CTTGAATTTTGGCTTTGACATTTTCAATTGTGTCAGAGGGTTCA 46048 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || |||||||| || |||||||||||||| || ||||| Sbjct 46049 ACTTCTAATGTAATGGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 46098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||| | ||| | ||| |||||| || || ||||| |||| | || || | || Sbjct 48652 CAGCACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTGCGTCCATC 48711 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| || || || || || ||||| | ||| || || | ||||| || ||||| || Sbjct 48712 TTCCAATTGTTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGAATGCCTTCCTTATC 48771 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCG 35702 ||| |||||||| | ||| || | | || | ||||||||| | || || | Sbjct 48772 T-TGAATTTTTGCTTTAACGTTTTCAATGGTATCAGAGGGTTCCACCTCTAATGTTATGG 48830 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||||| |||||||| |||||||| Sbjct 48831 TTTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 48864 >seq2205 Length=656796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || ||||| ||||||||||| | | | || || | || ||| Sbjct 562494 ACCAAGTGGAATGTGGATTCCTTCTGAATGTTGTAGTTTGTGAGAGTGCGGCCATCTTCC 562435 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||| ||||| || || || | || |||||||| | || | |||||| |||||| Sbjct 562434 AACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGGGATGCTCTCTTTGTCCTGA 562375 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||||| | | | | ||||| | ||||| || | | ||| || ||| Sbjct 562374 ATCTTTGCCTTCACATTCTCAATAGTGTCTGAAGCCTCCACTTCGAGGGCGATAGTCTTA 562315 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||||| ||||| || || || |||||| Sbjct 562314 CCCGTCAGGGTTTTTACGAAGATTTGCATT 562285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450776836113000