Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2205 603 1e-167 seq1613 95.1 2e-14 >seq2205 Length=656796 Score = 603 bits (668), Expect = 1e-167 Identities = 1191/1747 (68%), Gaps = 20/1747 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || || |||| ||||||||| || ||||| | || | |||| | |||||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || ||| ||| | ||| |||| |||| || || | ||||||||| | ||||| || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || ||||| || || ||||||| ||| | | ||| || | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG-GCTCG--TATTTTGAATGGAT 68631 || | ||| ||| | | | | ||||| | |||| ||| |||||||||| ||| Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTATATCTTTAGGAATTGCTTCAATATTTTGAATAGAT 19460 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 ||| || | || || | ||| || || || |||| ||| || | || |||||| Sbjct 19461 CCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAAA 19520 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 ||| | | ||| ||||||| | ||| ||||| || || || |||| | ||| Sbjct 19521 TCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATAA 19580 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 || || ||| ||||||| | |||||||||||||||| ||||||||||| |||||| Sbjct 19581 ATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGCA 19640 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTT 68871 |||||||| || || | |||| |||||||||||||||| | ||||| ||||| Sbjct 19641 GTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACCATGTTTGGCTATTTTTTCTTTG 19700 Query 68872 AGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATT 68931 || ||||| ||| | || | || |||||| | ||| ||||| | || Sbjct 19701 AGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAATATA 19760 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || | ||| ||| | || | ||| || ||||| || | || ||||||| ||| Sbjct 19761 CCTTGACTGGCAGGACAGCCTTCATAAGTCTCATAGACGCCATACTTCTCAGCTAACTCA 19820 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 69051 ||||| || |||| ||| || |||||||||||||| || || | | ||| | | | Sbjct 19821 CAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAATT 19880 Query 69052 GCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACC 69111 ||| | ||| ||| | || | | | | || ||||||||| || ||||| || || Sbjct 19881 GCTGCCTCACTTTCGTAAGGTATACGCATTAAAACAAATGCATCAGCTAATCCTTGGACT 19940 Query 69112 CCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAA 69171 ||||| ||||| |||| || ||| ||||||| ||| || ||||| | || |||||| Sbjct 19941 CCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATAA 20000 Query 69172 TTAATATCTATAATTTTATTAAGATTTCGGACTACTACT-TTAACCACGTCCTTTAGTTT 69230 || | ||| ||||||||||| ||||| | || | || | ||| || ||||||| ||| Sbjct 20001 TTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCTTTAATTT 20059 Query 69231 GAGAAAATCAAATC----GTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGAT 69286 | |||| | || |||| || | ||||||||||| | || | |||||||||| Sbjct 20060 GGTGAAATTATATGTTTTGTCC-TCATTCACAAACATATTTAAAGCAATTGATGCTAGAT 20118 Query 69287 TACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTAC 69346 | || || || || |||| || | |||| || || || || || | || || | Sbjct 20119 TGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGC 20178 Query 69347 ATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAA 69406 |||| ||||| |||| || | || || || ||| | || || | || || ||||| | Sbjct 20179 ATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCA 20238 Query 69407 TAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCAT 69466 | | ||||| || ||||||| || | ||||||||||| |||||||| || ||| Sbjct 20239 TGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACTTGAGCTC 20298 Query 69467 TTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCAT 69526 | | | || | | || |||||||||||||| ||| | ||| ||||| | Sbjct 20299 TCACTTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTTCAAATTCCT 20358 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | |||||| || | | |||||||||||||| || ||||| | ||| | | || Sbjct 20359 CACCCCAACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTGAT 20418 Query 69587 CATCCTTA--ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643 | ||| |||| |||||| || | || || ||||| | ||| ||| || || |||| Sbjct 20419 --TGCTTTCTACTCTTTTCATGAACAAGTCAGGTATCCATAAAGC-ATAGAATAGCTCTC 20475 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 ||| | |||||| || || || || ||||| | ||| || || || | ||||||| Sbjct 20476 TGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTCAAATATATCAG 20535 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 |||||||||||||| ||||| || | | || |||| |||||| ||||| || |||| Sbjct 20536 CATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCTA 20595 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 |||| |||||||| || || ||||| | ||| || | | ||||||||| ||||| Sbjct 20596 CATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGAGACACCAT 20655 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCC 69881 |||| |||| |||||| |||| |||| | ||| | | || || |||||||| || Sbjct 20656 TTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGT-GTACATGA-AGACCTATCCC 20713 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 || || ||||| || || ||||| |||| || |||||||| || ||||| ||||| Sbjct 20714 ACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGCT 20773 Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 |||||| |||| | |||||| || ||| | ||| | || |||| | || Sbjct 20774 ATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTTGCTGCTGA 20833 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || | || ||| ||| || || || ||||||| || || |||||||| || | || Sbjct 20834 GAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTAGGTGTTTAT 20893 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| || || || ||| |||||||| | || ||||| | ||||||||| || Sbjct 20894 AGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAGCATATGCTGTGG 20953 Query 70122 TCGTTCT 70128 | |||| Sbjct 20954 CCTTTCT 20960 >seq1613 Length=46735 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||| ||||| ||| | ||||| ||||| ||||||||||| |||||||| | | Sbjct 41418 TTGGATAGATCGACTTCCTCAACGGTCCAGAACGAAGCCTCTGCCTTCTTGTACATTTCC 41477 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 || |||||| |||| |||||||| || || ||||| Sbjct 41478 CAGATATCAGGATACTGTATTGGGAATATTACAAA 41512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686883255579000