Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2205 143 3e-29 >seq2205 Length=656796 Score = 143 bits (158), Expect = 3e-29 Identities = 488/746 (65%), Gaps = 17/746 (2%) Strand=Plus/Plus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 || ||||||| | | || ||| | || ||||| | || |||||||||| ||||| Sbjct 19551 AATTCACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATTCA 19610 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 ||||| ||||| ||||| || ||||| || ||||||||||| || | || || || Sbjct 19611 TTATTTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATTT 19670 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA-ACATCCCAGTCGT--AGT-TGAGCTT 110856 | |||||| | | || ||| ||||| ||| || | || ||| || | Sbjct 19671 CTAAGACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGG- 19729 Query 110857 GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAA 110916 ||||| | | |||||| ||| | || | | ||||| || ||| | || ||| | Sbjct 19730 GGTTTTA---TTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATA 19786 Query 110917 GGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATA 110976 || |||||| || | ||||| || ||||| || || || || | | | ||| Sbjct 19787 AGTCTCATAGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATA 19846 Query 110977 CATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCG 111036 || |||||||| || | ||| | | | ||| | || || | | ||| Sbjct 19847 AATTGTTTCAAATATTTGTTGATTTAATTTAATTGCTGCCTCACTTTCGTAAG-GTATAC 19905 Query 111037 GCAC-AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCA 111095 ||| |||| |||| |||| || | ||||| || || | || || |||| ||| | || Sbjct 19906 GCATTAAAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCA 19965 Query 111096 TATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154 |||| || ||| || ||| || || ||| ||||| ||||| | | |||||| Sbjct 19966 TATTTGAGTTTTTTGCC-TCTGGCACTGGGTAATAATTTACATCAATAATTTTATTTAGA 20024 Query 111155 TTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT 111214 || | || | | |||| || | ||| | | ||| ||| | | || | || Sbjct 20025 TTCTGAGTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTT---TGTCC 20081 Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 ||||| ||| || | | || |||||||| | |||||| |||||| ||||| | | Sbjct 20082 TCATTCACAAACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATC-TGA 20140 Query 111275 TCTG-TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 111333 | | |||| |||| |||||| || || |||||| | ||||| || ||||| ||||| Sbjct 20141 TGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTT 20200 Query 111334 TTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 111393 |||||| || || | ||||| | ||| || || |||||||| || || || || || Sbjct 20201 TTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAAC 20260 Query 111394 CTGTGATTTGAGAATAGCCTTCCAAA 111419 |||| || || |||||| ||||||| Sbjct 20261 TTGTGCTTCGATAATAGCTTTCCAAA 20286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008645060000