Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2205 132 6e-26 >seq2205 Length=656796 Score = 132 bits (146), Expect = 6e-26 Identities = 636/994 (64%), Gaps = 23/994 (2%) Strand=Plus/Minus Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 || |||||||| || ||||| | || |||||||| ||| ||| || | || Sbjct 20548 GAACCATGGCATGCTGATATATTTGAATTCCTTGATTTGAAAAAGAACACTGGGAAAGAA 20489 Query 104684 GAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 || | || |||| | || || |||| ||| | ||||| || || | |||||||| || Sbjct 20488 GAAGTCCG-TGCCAGAGAGCTATTCTATGCTTTATGGATACCTGACTTGTTCATGAAAAG 20430 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 ||| || | | ||||| | || | || || | | ||||| || | || Sbjct 20429 AGTAGAAAGCAATCAAGATTGGAGTATCATGTGCCCCCATGAATGTCCTGGACTAGCAGA 20370 Query 104803 -TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG-CG 104860 || | ||||||||| |||||||| | || || || || |||| ||||| || Sbjct 20369 CTGTTG-GGGTGAGGAATTTGAAGCTTTGTATGAGAAATATGAAAAAGAGGGTCGCTTCG 20311 Query 104861 ACTGCGACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 104919 || || ||| |||| | | | |||||||||||| || | | ||| || || Sbjct 20310 --TGAAACAAGTGAGAGCTCAAGTTCTTTGGAAAGCTATTATCGAAGCACAAGTTGAAAC 20253 Query 104920 TGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 104979 || || |||||||||||||| ||||| | || || ||| || || |||||||| || Sbjct 20252 AGGAACTCCATACATGCTTTATAAAGATTCATGCAATAGAAAAAGCAACCAAAAGAACTT 20193 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039 |||| || || | ||| | || || ||||| | |||| || |||||| Sbjct 20192 GGGTACTATTAAATGCAGCAACTTGTGCACTGAAATTGTAGAATACACCTCATCAGATGA 20133 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 ||||||||| || || |||||||| ||| | | || |||| || || |||||| Sbjct 20132 AGTGGCTGTGTGCAATCTAGCATCAATTGCTTTAAATATGTTTGTGAAT-GAG-GACAAA 20075 Query 105100 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 |||| | ||| ||| | | |||||||| || ||| | || | || ||||| | Sbjct 20074 -ACATATAATTTCACCAAATTAAAGGAAGTTACTAAGACTATAACTCAGAATCTAAATAA 20016 Query 105160 AGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACC 105218 | |||||||| ||||| |||||| || ||| || || || |||||||| |||| Sbjct 20015 AATTATTGATGTAAATTATTACCCAGTGCCAGA-GGCAAAAAACTCAAATATGAGGCACC 19957 Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 105278 | || || || | || || || || | || |||| ||| || | || | | Sbjct 19956 GACCCATCGGAATTGGAGTCCAAGGATTAGCTGATGCATTTGTTTTAATGCGTATACCTT 19897 Query 105279 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338 || || | ||| | || | ||| | |||||||| || || ||| | | | Sbjct 19896 ACGAAAGTGAGGCAGCAATTAAATTAAATCAACAAATATTTGAAACAATTTATTATGGGG 19837 Query 105339 CTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 | || || || |||| ||||| || ||| |||| ||||| || | ||| || | Sbjct 19836 CACTAGAAGCCAGTTGTGAGTTAGCTGAGAAGTATGGCGTCTATGAGACTTATGAAGGCT 19777 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC-----CAAGCT 105453 ||| || ||||| | | |||| |||||||||| | | | || || || Sbjct 19776 GTCCTGCCAGTCAAGGTATATTGCAATATGATATGTGGAA---TAAAACCCCCACAGACT 19720 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | | | |||| | ||||| ||| || | | |||||| | || || Sbjct 19719 T--GTGGAATTGGGTGTCACTCAAAGAAAAAATAGCCAAACATGGTCTTAGAAATTCCCT 19662 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 | | |||||||||||||| || ||||| || ||||| ||||| |||||||||| || Sbjct 19661 ATTATTAGCTCCAATGCCAACTGCATCCACTGCTCAAATATTGGGAAATAATGAATCATT 19602 Query 105574 TGAACCCTACACGACGAACATCTATCTGAGAAGA 105607 |||||| | || | ||||| |||| ||| || Sbjct 19601 TGAACCATTTACTTCCAACATTTATCAAAGACGA 19568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583239109989000