Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1747 107 2e-18 >seq1747 Length=714427 Score = 107 bits (118), Expect = 2e-18 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCA-AGACGCGTACCGAATTG 117363 ||||| |||||||| | ||| || | |||||||| || ||| || ||||||||||| || Sbjct 225914 GTGAAGATGTAACGCGGGCTGGCGGAGTCCTTGCCGCC-GCAGAGCCGCGTACCGAACTG 225856 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | |||||||| ||||| | |||||||| ||||||| |||| || |||||||| || Sbjct 225855 ACCGCGCGGCTCCAGCAGGTTGATGTTGTTGGAGCCCACATAGTTCTGCGCCAAGTTCAC 225796 Query 117424 AATCGT 117429 ||||| Sbjct 225795 TATCGT 225790 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||||| || | |||||| | |||||||| || |||||||| || |||| Sbjct 225916 GCGTGAAGATGTAACGCGGGCTGGCGGAGTCCTTGCCGCCGCAGAGCCGCGTACCGAACT 225857 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || ||||| || ||||||| |||||||| |||||| | ||||| ||||| |||| Sbjct 225856 GACCGCGCGGCTCCAGCAGGTTGATGTTGTTGGAGCCCACATAGTTCTGCGCCAAGTTCA 225797 Query 152147 CAATCGT 152153 | ||||| Sbjct 225796 CTATCGT 225790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195650405000