Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq806 87.8 1e-12 seq1608 84.2 2e-11 >seq806 Length=81131 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||||||| | ||||| ||| |||||| | || || ||| | | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| ||||| |||||||| || |||| || | Sbjct 46038 GACACAATTGAAAAT--GTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATC 45981 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || ||||| || || || || | || |||| ||||| | |||||||||| Sbjct 45980 AACAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACA 45921 Query 27968 ACATCCAAAAAGA--GAGCACTTTGCATTTGGTT 27999 | || ||||| || | ||||| ||||| ||| Sbjct 45920 ATATTCAAAAGGAATCAACACTT--CATTTAGTT 45889 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || || |||||||| ||||| ||||| || | ||||| || || || Sbjct 48522 GATCAGCAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCAGAC 48463 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||||| || | || || || ||||||||||| || || Sbjct 48462 TACAATATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGG 48410 >seq1608 Length=32450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || || ||||| ||||| | || Sbjct 30169 GACAAGGAAGGAATTCCCCCAGACCAGCAGCGTCTTATCTTCGCCGGCAAACAGCTTGAA 30228 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | || || |||||||| || |||||| ||| |||||||||||||| Sbjct 30229 GATGGACGCACTCTTTCTGACTACAACATTCAGAAAGAGTCGACTCTGCATTTGGTTTTG 30288 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 30289 CGTCTGCGTGGTGG 30302 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| | || || ||| ||| || |||| || || | Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 |||| | | || || ||| ||||| ||||||||||| |||| || || Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || | || || || ||||| || || || |||| |||| |||| || ||||| Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||| || | || | ||| ||||| | ||||| || Sbjct 29571 CATCCAAAAAGAATCTACGCTTCACCTTGTTCTGCGTCTCCGTGGTGG 29618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849497207825