Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1608 100 2e-16 seq2205 87.8 2e-12 >seq1608 Length=32450 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || || ||||| |||| ||| || ||| | Sbjct 30518 CGCAAGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGTCCA 30459 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| ||||| ||||||||||||||||| | ||| | | || ||| Sbjct 30458 TCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTG 30399 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| || | | | | |||||| | |||||| || | |||||| Sbjct 30398 TCTTGGATTTTAGCCTTTACGTTTTCAATGGTATCGGAAGGCTCCACTTCAAGGGTGATA 30339 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| || || || || || ||||| Sbjct 30338 GTTTTTCCAGTCAATGTCTTTACGAAAATCTGCAT 30304 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || |||||| || || || || || | ||| || ||| | Sbjct 30290 CGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGTCCA 30231 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||||||||| || || ||||||||||||||||| | ||| | | || ||| Sbjct 30230 TCTTCAAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTG 30171 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || || | | | | ||||| | || || || | ||||| Sbjct 30170 TCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGTTCAACTTCTAGGGTGATG 30111 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || || || || |||||||| Sbjct 30110 GTTTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 30076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| | || |||||| || || || || || | ||| || || | Sbjct 31202 CGCAAAACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAAAGAGTGCGACCA 31143 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || ||||||||||||||||| | ||| | | ||| ||| Sbjct 31142 TCTTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTG 31083 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || || | |||||| || | |||||| Sbjct 31082 TCCTGGATCTTGGCCTTTACATTCTCAATAGTGTCAGAAGGCTCCACTTCAAGAGTGATA 31023 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || || || || || |||||||| Sbjct 31022 GTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 30988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || |||||| || || || || || | ||| || || | Sbjct 31430 CGCAAAACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAAAGGGTACGCCCA 31371 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||||||||| || || ||||||||||||||||| | ||| | | || ||| Sbjct 31370 TCTTCAAGCTGTTTGCCAGCGAAGATAAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTG 31311 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || || | | | | ||||| | ||| || || | |||||| Sbjct 31310 TCTTGGATCTTGGCCTTAACATTTTCGATGGTATCAGAAGGCTCGACTTCGAGGGTGATA 31251 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| || || || || || ||||| Sbjct 31250 GTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCAT 31216 >seq2205 Length=656796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||||| | || ||| ||| || || || ||| || || || || || || || | Sbjct 548975 CCTCCTCTCA-GCCTAAGCACTAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCTGA 548917 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| || | || || | |||||| || || || |||||||| |||||||| | || Sbjct 548916 GAGTGTGCGGCCATCTTCCAACTGTTTACCGGCGAAGATAAGACGTTGCTGGTCTGGCGG 548857 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | || |||||||||| ||| | | || || | || | | || || | ||||| Sbjct 548856 GATGCCCTCTTTGTCC-TGAATCTTTGCCTTCACATTCTCAATAGTGTCCGAAGCCTCCA 548798 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | ||||| | || |||||||| ||||| || ||||||||||| Sbjct 548797 CCTCGAGGGTGATGGTCTTACCCGTCAGGGTTTTTACGAAGATTTGCAT 548749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429530025616175