Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq806 141 6e-29 seq1608 129 4e-25 >seq806 Length=81131 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || ||||| || || | |||||||| || | Sbjct 46098 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACATTAGAAGTTGAACCCTCT 46039 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| |||||||| || | || ||||||||| Sbjct 46038 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAGGGAATTCCACCAGATCAA 45979 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || || || || || || ||||||| ||||||| | ||||||||| Sbjct 45978 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACTCTTTCCGATTACAAT 45919 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || ||| | ||||||||| |||||||| |||| ||| Sbjct 45918 ATTCAAAAGGAATCAACACTTCATTTAGTTCTAAGGTTGAGAGGTGGA 45871 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| |||||| | || ||||| | | Sbjct 48636 ATGCAAATTTTCGTAAAAACATTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCT 48577 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||||| | |||| | || || || ||| | || || ||||| Sbjct 48576 GACACAATCGAAAATGTTAAAGCCAAAA-TCCAGGATAAGGAGGGTATCCCACCTGATCA 48518 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || |||||||||||||| ||||||| | |||||| ||| || ||||| Sbjct 48517 GCAACGATTGATCTTTGCCGGCAAACAGTTGGAAGATGGACGCACATTATCAGACTACAA 48458 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || || | || ||||| || | ||||| |||||| Sbjct 48457 TATCCAAAAAGAATCTACCCTTCACTTAGTATTGCGTTTGCGCGGAGGA 48409 >seq1608 Length=32450 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| |||||||| ||||| || |||||||| | | Sbjct 30076 ATGCAAATTTTCGTGAAGACCCTCACTGGAAAAACCATCACCCTAGAAGTTGAACCTTCT 30135 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | |||| | || | | ||||| ||||| | || ||||| || Sbjct 30136 GATACCATCGAAAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGAATTCCCCCAGACCA 30194 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| || ||||| | ||||||| | || ||||| Sbjct 30195 GCAGCGTCTTATCTTCGCCGGCAAACAGCTTGAAGATGGACGCACTCTTTCTGACTACAA 30254 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || |||||||| || | ||||| ||||| Sbjct 30255 CATTCAGAAAGAGTCGACTCTGCATTTGGTTTT 30287 Score = 127 bits (140), Expect = 1e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||| | ||||| ||||| ||||| || |||||||| | | Sbjct 29391 AATGCAGATTTTTGTGAAAACCTTGACGGGTAAAACTATCACCCTTGAAGTTGAGCCATC 29450 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| ||||| |||||| ||||||||||| | || |||||||| Sbjct 29451 CGACACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGATCA 29510 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || | ||||||| ||||| | || ||||| Sbjct 29511 GCAGCGACTGATCTTCGCTGGAAAGCAGTTAGAAGACGGTCGCACACTGTCTGACTACAA 29570 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| || || Sbjct 29571 CATCCAAAAAGAATCTAC 29588 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || || || || || |||||||| || | | Sbjct 29620 ATGCAGATTTTCGTTAAAACGCTTACTGGTAAGACAATTACCCTCGAAGTCGAGCCTTCA 29679 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| |||| | ||||||| |||||||||||| | || ||||| || Sbjct 29680 GATACTATCGAGAATGTTAAGGC-AAAAATTCAAGACAAAGAAGGTATCCCACCAGACCA 29738 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 29739 GCAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 29798 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 29799 CATTCAAAAGGAATCCAC 29816 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || ||||| |||||||| ||||| || | | Sbjct 30532 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACCATCACTCTTGAAGTGGAGCCTTCT 30591 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || ||| || ||||| || | || ||||| || Sbjct 30592 GACACTATTGAGAATGTGAAAGC-TAAGATTCAAGATAAAGAGGGAATTCCCCCAGACCA 30650 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || ||||| | || || | |||||||| Sbjct 30651 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGTACCCTTTCTGATTACAA 30710 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 30711 CATCCAGAAAGAATCTAC 30728 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || |||||||| ||||| |||||||| || | | Sbjct 31444 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATCACCCTCGAAGTCGAGCCATCT 31503 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || ||||| ||||| ||||| | || ||||| || Sbjct 31504 GATACCATCGAAAACGTTAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 31563 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || |||||||| | ||||||| | || |||||| Sbjct 31564 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGACTACAAC 31623 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 31624 ATCCAGAAAGAGTCTAC 31640 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || |||||||| ||||| |||||||| || | | Sbjct 31216 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACTATCACCCTCGAAGTCGAGCCTTCT 31275 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | | |||| |||| | || || ||||| ||||| | || ||||| || Sbjct 31276 GATACCATCGAAAATGTTAAGGC-CAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCA 31334 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || |||||||| || ||||| | || || | || ||||| Sbjct 31335 GCAGCGTCTTATCTTCGCTGGCAAACAGCTTGAAGATGGGCGTACCCTTTCTGACTACAA 31394 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| || | ||||| ||||| | ||||||| || Sbjct 31395 CATTCAGAAAGAGTCGACTCTGCATTTGGTTTTGCGTCTGCGAGGTGG 31442 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || |||||||| ||||| || ||||| || | | Sbjct 30304 ATGCAGATTTTCGTAAAGACATTGACTGGAAAAACTATCACCCTTGAAGTGGAGCCTTCC 30363 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||| ||||| ||||| ||||| | || || || || Sbjct 30364 GATACCATTGAAAACGTAAAGGCTAAAATCCAAGACAAGGAAGGAATTCCCCCTGACCAG 30423 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || || ||||| | ||||||| | ||| || ||| Sbjct 30424 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTTTCCGACTATAAC 30483 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || || || || | ||||||| || Sbjct 30484 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGG 30530 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || |||||||| |||||||| |||||||| | | Sbjct 29848 ATGCAGATTTTCGTGAAGACATTGACTGGAAAAACCATCACTCTTGAAGTTGAGCCTTCT 29907 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | |||| || || || || || || | || ||||| || Sbjct 29908 GACACTATTGAGAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 29967 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || |||||||| || || ||||| | || || | ||| || ||| Sbjct 29968 CAGCGTCTAATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGTACCCTTTCCGACTATAAC 30027 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || || || || | ||||||| || Sbjct 30028 ATTCAGAAGGAATCTACCCTTCACTTGGTCTTGCGTCTGCGAGGTGG 30074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997344511300