Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2898 239 4e-58 seq806 82.4 6e-11 >seq2898 Length=111689 Score = 239 bits (264), Expect = 4e-58 Identities = 589/881 (67%), Gaps = 17/881 (2%) Strand=Plus/Minus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| ||||| ||||||||||| || ||| | | || || ||||| ||| || || | Sbjct 28381 CGCTTACTTCGTCGAATGGGGCGTCTACCCCAGGAAGTTCCCCGTCGACCGCGTACCCAT 28322 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 || ||| | | ||| | ||||||||||| || ||||| || || || || |||||||| Sbjct 28321 CCCGAATCTTACCCATCTTCTGTACGGTTTCATCCCAATCTGCGGTGGAGATGGCATCAA 28262 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 |||| | ||| || ||||| || | ||| |||||||||| ||| | || | Sbjct 28261 CGACAGTTTGAAAGAAATCGAAGGCAGCTTCCAAGCTCTGCAACGATCCTGCAGTGGCAG 28202 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || || |||||||| || || |||||| |||||| || | || ||||| ||||| || Sbjct 28201 GGAGGACTTCAAAGTATCGATTCACGACCCTTGGGCAGCTCTTCAGAAACCACAAAAGGG 28142 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 || | | |||||||| || ||||| || || || ||||| ||||| | ||| Sbjct 28141 TCTGGCGTCCTGGAACGAACCCTACAAGGGTAATTTCGGACAGCTGATGATGTTGAAACA 28082 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 ||||| ||| || | || || |||| ||| | || || ||||| || | || || || Sbjct 28081 GGCAAGACCTGACCTGAAGATCTTACCTTCCGTTGGTGGTTGGACCCTGGCTGATCCATT 28022 Query 109500 TTATTTTATGCAC-GATTCGGCGAA-AAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557 | | || | ||| || || || | || | | |||||||| || ||| || || Sbjct 28021 CT-TCTTCTTCACTGACAAGGTTAAGAGGAAGCGC-TTCGTTGACTCTGTGAAGGACTTC 27964 Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617 | || |||||||||||||| || || |||||||| |||||||| || || || ||| Sbjct 27963 CTTGAAACCTGGAAATTCTTTGATGGAGTGGACATTGACTGGGAGTTCCCTGGTGGTAAG 27904 Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTA 109677 || || || || |||||| | | ||| | | | ||| | | | || | Sbjct 27903 GGCGCTAACCCTGATCTCGGTAGC---CCTGATGACGGTCACATCTACGTCGAGCTGATG 27847 Query 109678 AAAGAGTTGCGCGCCATGTTGGACGA-CT---TGCAAACGGCCACCAACAAAACGTACGA 109733 || || || | | ||| | |||| || ||| || | | || ||| ||||| Sbjct 27846 AAGGAACTGAGAGAGATGCTTAACGAGCTGTCTGCCAA-GACTGGAAAGAAA---TACGA 27791 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 | |||| ||||| ||| | |||| || || ||| | || || || ||| |||| Sbjct 27790 ACTGACTTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTAGTAGACTACAAAGCGGC 27731 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 || || || ||||| | || || || |||| ||||| ||||| || ||||||||||| Sbjct 27730 TCAGCAGTACATGGACCACATCTTCTTGATGAGCTACGACTTCAAGGGAGCTTGGTCAAA 27671 Query 109854 C-ACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912 | || ||| ||| | || | | || |||| ||| | ||||| || || || | Sbjct 27670 CGACACTCTT-GGCCACCAAGCTGCCCTGCACGCTCCCGCCTGGAACCCCAAGGAGACTT 27612 Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972 |||| || || | | |||||| ||||| || ||| ||||| |||||| Sbjct 27611 ACACAACTGACTTCGGTGTCAAATTCCTGTTGGCTCAGGGAGTCAGCCCTAAGAAAATTG 27552 Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTC 110013 | |||| ||||| ||||||||||| || ||||| || ||| Sbjct 27551 TCGTTGGTGTAGCTATGTACGGCCGTGGTTGGACTGGAGTC 27511 >seq806 Length=81131 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||| ||||| || |||||||||||||| | || ||| ||| ||| Sbjct 47972 ACCAAGTGAAGAGTGGATTCCTTCTGAATATTGTAATCAGACAAGGTTCGCCCATCCTCC 48031 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 ||||| ||||| || | || | | ||||||||| ||| | ||||| ||||| | Sbjct 48032 AATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATACCTTCCTTGTCCTGA 48091 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTT 101207 ||||| ||| |||| | | || || | || ||| ||| | || ||||| | Sbjct 48092 ATTTTAGCTTTGACATTTTCAATTGTGTCAGAGG--GTTCAACTTCTAGTGTGATAGTCT 48149 Query 101208 TGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||| ||||| ||||| | || |||||||| Sbjct 48150 TGCCAGTCAAAGTTTTGACGAAGATTTGCAT 48180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409645946595525