Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2205 668 0.0 seq1613 113 6e-20 >seq2205 Length=656796 Score = 668 bits (740), Expect = 0.0 Identities = 1205/1747 (69%), Gaps = 22/1747 (1%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || || |||| ||||||||| || ||||||| |||| |||| | |||||| Sbjct 19221 GCTGGCTTCGTGCGTAAATAGTACATTCCCGTTTTTAAGCCCATTTTCCACGCATAGAAA 19280 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||||| ||| |||| | || || || | ||||||||| | || || || Sbjct 19281 TGAATAGATGTCAATTTACCATAATTTGGTTCAGCAACATGAATATTGAAGGATTGGCTC 19340 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || || || ||||| ||||| ||||||| ||| | || ||| || | |||| Sbjct 19341 TGATCAATAAATGCCCCTCTGTCAGCAGCCATTTGTATTGTTGTTTTTACAGACACTTCC 19400 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTG--TATTTTGAATGGAA 77039 || | |||||| | | | | ||||| | |||| | || |||||||||| || Sbjct 19401 CAGACAGTTTTATATAAGTCCCTTATATCTTTAGGAATTGCTTCAATATTTTGAATAGAT 19460 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| || || || ||| || ||||| |||| ||| || | || |||||| Sbjct 19461 CCATTATTGTGGATGATAAGATTTTTCATATCTTCATCCCATAAATCAGCTTCAGTTAAA 19520 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 ||| | | |||| ||||||| | ||| ||||| || ||||| |||| | ||| Sbjct 19521 TCTCGTAACAAATGATGATTAACAACTTGGAATTCACCTGACAAGACTCGTCTTTGATAA 19580 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || ||| ||||||| | |||||||| |||||||| ||||||||||| || ||| Sbjct 19581 ATGTTGGAAGTAAATGGTTCAAATGATTCATTATTTCCCAATATTTGAGCAGTGGATGCA 19640 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279 |||||||| || || | |||| |||||| ||||||||| | ||||| ||||| Sbjct 19641 GTTGGCATTGGAGCTAATAATAGGGAATTTCTAAGACCATGTTTGGCTATTTTTTCTTTG 19700 Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 || | ||||| ||| | |||| || || ||| | ||| ||||| | || Sbjct 19701 AGTGACACCCAATTCCACAAGTCTGTGGGGGTTTTATTCCACATATCATATTGCAATATA 19760 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATA-AGGTCCTTCTGTTTCAGCTAGTTC 77398 || | ||| ||| | || | ||| || ||||| | | | | || | ||||||| || Sbjct 19761 CCTTGACTGGCAGGACAGCCTTCATAAGTCTCATAGACGCCATACT-TCTCAGCTAACTC 19819 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 |||||| ||||| | ||| || |||||||||||||| || || | | ||| | | Sbjct 19820 ACAACTGGCTTCTAGTGCCCCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTAAT 19879 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| | ||| || | || | | | | || ||| ||||| |||||||| || || Sbjct 19880 TGCTGCCTCACTTTCGTAAGGTATACGCATTAAAACAAATGCATCAGCTAATCCTTGGAC 19939 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATA 77578 |||||| || || |||| || ||| |||| || |||| || ||||| | || ||||| Sbjct 19940 TCCAATTCCGATGGGTCGGTGCCTCATATTTGAGTTTTTTGCCTCTGGCACTGGGTAATA 19999 Query 77579 ATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACT-TTAACCACGTCCTTTAGTT 77637 ||| | || ||||||||||| ||||| || | || | ||| || ||||||| || Sbjct 20000 ATTTACATCAATAATTTTATTTAGATT-CTGAGTTATAGTCTTAGTAACTTCCTTTAATT 20058 Query 77638 TAAGAAAATCAAATCTTC---CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 | |||| | || || | || | |||||||| || ||||| || |||||||||| Sbjct 20059 TGGTGAAATTATATGTTTTGTCCTCATTCACAAACATATTTAAAGCAATTGATGCTAGAT 20118 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 | || || || || |||| | || |||| || || || || || | || || | Sbjct 20119 TGCACACAGCCACTTCATCTGATGAGGTGTATTCTACAATTTCAGTGCACAAGTTGCTGC 20178 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 |||| ||||| |||| || | ||||||||| ||| |||||||||| || |||||||| | Sbjct 20179 ATTTAATAGTACCCAAGTTCTTTTGGTTGCTTTTTCTATTGCATGAATCTTTATAAAGCA 20238 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | | ||||| || ||||||| |||| ||||||||||| |||||| | ||| |||| Sbjct 20239 TGTATGGAGTTCCTGTTTCAACTTGTGCTTCGATAATAGCTTTCCAAAGAACTTGAGCTC 20298 Query 77875 TTATCATAGATTT--GTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTC 77932 | | | | || | | || | |||| ||||||||| ||| | ||||||||| Sbjct 20299 TCAC--TTGTTTCACGAAGCGACCCTCTTTTTCATATTTCTCATACAAAGCTTCAAATTC 20356 Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992 || |||||| || | | |||||| ||||||| |||||||| | ||| || Sbjct 20357 CTCACCCCAACAGTCTGCTAGTCCAGGACATTCATGGGGGCACATGATACTCCAATCTTG 20416 Query 77993 AT--CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 || ||| || |||| |||||| || | ||||||||||||| |||| ||||| ||| Sbjct 20417 ATTGCTTTCT--ACTCTTTTCATGAACAAGTCAGGTATCCATAAAGCATAGAATAGCTCT 20474 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 | || | |||||| || || || |||||||| | ||| || || || | |||||| Sbjct 20475 CTGGCACGGACTTCTTCTTTCCCAGTGTTCTTTTTCAAATCAAGGAATTCAAATATATCA 20534 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 | |||||||||||||| ||||| || | | || |||| |||||||||||| || ||| Sbjct 20535 GCATGCCATGGTTCTAAGTATATGGCAAATGCGCCGGGTCTTTTATTACCTCCTTGGTCT 20594 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | ||||| || ||||| || |||||||| ||||| || | | ||| ||||| ||| Sbjct 20595 ACATATCGAGCAGTGTTGTTGTAAACTCTTAACATGGGTACTAGACCATTAGAGACACCA 20654 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--ATTACTAATGGATATCCCTATTC 78288 ||||| |||| |||||| |||| |||| | ||| | | ||| | | ||||| | Sbjct 20655 TTTGTACCAGCTATATAAGTTCCCTTTGCTCTAATGCAGTGTACATGAAGA--CCTATCC 20712 Query 78289 CTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATAC 78348 | || || |||||| || || || || |||| || || || || || ||||| || | Sbjct 20713 CACCAGCTGACTTAGAAATGAGGGCACATTGTTTTAACGTGTCATAAATTCCCTCAATGC 20772 Query 78349 TGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCAT 78408 | |||||| |||| | |||||| || ||| | ||| | | |||| |||| Sbjct 20773 TATCATCCCTCATTGCTATAAGAAAGCATGAAGATAATTGTGGTCGTGGAGTTGCTGCTG 20832 Query 78409 TAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 78468 || | || ||| |||||| ||||| ||||||| || || |||||||| || | | Sbjct 20833 AGAAAAGAGTTGGACTTGCATGTGTAAAATATTTTTCTGACAGAAGATTGTAGGTGTTTA 20892 Query 78469 TAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAG 78528 |||| || ||||| | ||| ||||||| | || ||||| | ||||||||| | Sbjct 20893 TAGCCCCCTCGATGTCTTCTCCATGTATTCCTATAGAAACTCGCATGAGCATATGCTGTG 20952 Query 78529 GTCTTTC 78535 | ||||| Sbjct 20953 GCCTTTC 20959 >seq1613 Length=46735 Score = 113 bits (124), Expect = 6e-20 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||| ||| | || || ||||| | || ||||| | ||| || || || Sbjct 40320 TCATCTCTAGAAATCAGCTCATTGCTGAATGTCAATCCAGGCATCAATCCTCGCTTCTTC 40379 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | |||||| |||| || ||| ||||| |||||||||||||| || || ||||| || Sbjct 40380 ATCCAAAAGATTGATGCAAAACTGCCAGAGAAGAATATGCCTTCAACAGCAGCAAAGGCA 40439 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 | | | ||| | | ||||| ||| | |||||| | | ||||| |||||| Sbjct 40440 ATGATACGCTCAGCAAATGTGGCTGACTTGCTTGCAATCCACTGGAGGGCCCAGTCAGCC 40499 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 |||||||| ||||| |||| ||||| ||||||||||| || |||| Sbjct 40500 TTCTTCTTCACACAGGGCAGGGTTTCAATAGCATTAAACAGGAAGT 40545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642967004000