Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20zea_20[genbank_20GCA_5F002150865.1_202017-05-19] 2,975 sequences; 341,147,348 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2205 668 0.0 seq2446 84.2 3e-11 >seq2205 Length=656796 Score = 668 bits (740), Expect = 0.0 Identities = 1226/1779 (69%), Gaps = 27/1779 (2%) Strand=Plus/Plus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| |||||||| || | | | ||||| || || |||| ||||||||| || |||| Sbjct 19195 CAACAGTGAACTGGATAGCATTTGCGGCTGGCTTCGTGCGTAAATAGTACATTCCCGTTT 19254 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 ||| |||| |||| | |||||||| || ||| | ||| |||| | || || | Sbjct 19255 TTAAGCCCATTTTCCACGCATAGAAATGAATAGATGTCAATTTACCATAATTTGGTTCAG 19314 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 | | ||||||||| | || || || ||||| || || || ||||| ||||| ||||||| Sbjct 19315 CAACATGAATATTGAAGGATTGGCTCTGATCAATAAATGCCCCTCTGTCAGCAGCCATTT 19374 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 ||| | || ||| || | |||||| | |||||| | | | | ||||| | | Sbjct 19375 GTATTGTTGTTTTTACAGACACTTCCCAGACAGTTTTATATAAGTCCCTTATATCTTTAG 19434 Query 75612 GAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 ||| | || |||||||||| ||||| || || || ||| || || || | Sbjct 19435 GAATTGCTTCAATATTTTGAATAGATCCATTATTGTGGATGATAAGATTTTTCATATCTT 19494 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 ||| ||| || | || |||||| ||| | | |||| ||||||||| ||| |||| Sbjct 19495 CATCCCATAAATCAGCTTCAGTTAAATCTCGTAACAAATGATGATTAACAACTTGGAATT 19554 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 | || ||||| |||| || ||||| || ||| ||||||| | |||||||| | Sbjct 19555 CACCTGACAAGACTCGTCTTTGATAAATGTTGGAAGTAAATGGTTCAAATGATTCATTAT 19614 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 ||||||| ||||||||||| || ||||| ||||| || || | |||| |||||| | Sbjct 19615 TTCCCAATATTTGAGCAGTGGATGCAGTTGGCATTGGAGCTAATAATAGGGAATTTCTAA 19674 Query 75849 GACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAA 75908 |||||||| | ||||| ||||| || | ||||| ||| | |||| || Sbjct 19675 GACCATGTTTGGCTATTTTTTCTTTGAGTGACACCCAATTCCACAAGTCTGTGGGGGTTT 19734 Query 75909 CATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGT 75968 || ||| | ||| ||||| | || || | || ||| | || | ||| || || | Sbjct 19735 TATTCCACATATCATATTGCAATATACCTTGACTGGCAGGACAGCCTTCATAAGTCTCAT 19794 Query 75969 AAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTT 76028 | || | ||| ||||||| || ||||| || |||| || || ||||||||||||| Sbjct 19795 AGACGCCATACTTCTCAGCTAACTCACAACTGGCTTCTAGTGCCCCATAATAAATTGTTT 19854 Query 76029 CGAAAATCTTCTTATTAAGATC--TTGC-GCTTCAAGACTATCAAAAGGATAATGTAAAA 76085 | || || | | ||| | | |||| || ||| || || |||| | | | | Sbjct 19855 CAAATATTTGTTGATTTAATTTAATTGCTGCCTCA---CTTTCGTAAGGTATACGCATTA 19911 Query 76086 GAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGG 76145 || ||||||||| |||| ||| || |||||||| || || |||| || ||| |||| | Sbjct 19912 AAACAAATGCATCAGCTAATCCTTGGACTCCAATTCCGATGGGTCGGTGCCTCATATTTG 19971 Query 76146 AAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGA 76205 | ||| || ||||| | ||||||||||| | ||| ||||||||||| ||||| |||| Sbjct 19972 AGTTTTTTGCCTCTGGCACTGGGTAATAATTTACATCAATAATTTTATTTAGATT-CTGA 20030 Query 76206 CAACTACT-TTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC---CATCTATCACA 76261 || | ||| || ||||||| |||| |||| | || || | || ||||| Sbjct 20031 GTTATAGTCTTAGTAACTTCCTTTAATTTGGTGAAATTATATGTTTTGTCCTCATTCACA 20090 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATAT 76321 |||||||| | ||| || ||||||||||| || || || || |||| | || ||| Sbjct 20091 AACATATTTAAAGCAATTGATGCTAGATTGCACACAGCCACTTCATCTGATGAGGTGTAT 20150 Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 | || || || ||||| | || || || || ||||| || | || | ||||||||| Sbjct 20151 TCTACAATTTCAGTGCACAAGTTGCTGCATTTAATAGTACCCAAGTTCTTTTGGTTGCTT 20210 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCG 76441 ||| | || ||||| || |||||||| | | |||||||| ||||||| |||| |||| Sbjct 20211 TTTCTATTGCATGAATCTTTATAAAGCATGTATGGAGTTCCTGTTTCAACTTGTGCTTCG 20270 Query 76442 ATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTT--GTATCGCTTCTCTCTTT 76499 ||||||| |||||| | ||| |||| | | | | || | | || |||| ||| Sbjct 20271 ATAATAGCTTTCCAAAGAACTTGAGCTCTCACTT--GTTTCACGAAGCGACCCTCTTTTT 20328 Query 76500 CATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATT 76559 |||||| ||| || ||||||||| || |||||| || | | |||||||||| Sbjct 20329 CATATTTCTCATACAAAGCTTCAAATTCCTCACCCCAACAGTCTGCTAGTCCAGGACATT 20388 Query 76560 CATTCGGACACATCAATGACCACTCACCAT--CTTCCTTAACCCGTTTCATAAAGAGATC 76617 ||| || ||||| | ||| || || ||| || || | |||||| || | || Sbjct 20389 CATGGGGGCACATGATACTCCAATCTTGATTGCTTTCT--ACTCTTTTCATGAACAAGTC 20446 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 ||||||||||| |||| ||||| |||| || | |||||| || || || ||||| Sbjct 20447 AGGTATCCATAAAGCATAGAATAGCTCTCTGGCACGGACTTCTTCTTTCCCAGTGTTCTT 20506 Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737 ||| | ||| ||||| || | ||||||| |||||||||||||| ||||| || | | Sbjct 20507 TTTCAAATCAAGGAATTCAAATATATCAGCATGCCATGGTTCTAAGTATATGGCAAATGC 20566 Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797 || |||| |||||||||||| || |||| ||||| |||||||| || |||||||| || Sbjct 20567 GCCGGGTCTTTTATTACCTCCTTGGTCTACATATCGAGCAGTGTTGTTGTAAACTCTTAA 20626 Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||| || | | || ||||| ||||||||| |||| |||||| |||| ||| | Sbjct 20627 CATGGGTACTAGACCATTAGAGACACCATTTGTACCAGCTATATAAGTTCCCTTTGCTCT 20686 Query 76858 AAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 ||| | | || || || ||||| || || || ||||| || || ||||| || Sbjct 20687 AATGCAGT-GTACATGA-AGACCTATCCCACCAGCTGACTTAGAAATGAGGGCACATTGT 20744 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || |||||||| || ||||| || ||||||||| |||| | |||||| || | Sbjct 20745 TTTAACGTGTCATAAATTCCCTCAATGCTATCATCCCTCATTGCTATAAGAAAGCATGAA 20804 Query 76976 GACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCAT 77035 || | ||| | | |||| |||| || | || ||| |||||| || || || Sbjct 20805 GATAATTGTGGTCGTGGAGTTGCTGCTGAGAAAAGAGTTGGACTTGCATGTGTAAAATAT 20864 Query 77036 TTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCT 77095 ||||| || || |||||||| || | ||| | | || || || | ||| |||||| Sbjct 20865 TTTTCTGACAGAAGATTGTAGGTGTTTATAGCCCCCTCGATGTCTTCTCCATGTATTCCT 20924 Query 77096 ACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 | || || ||||| | ||||||||| || | |||| || Sbjct 20925 ATAGAAACTCGCATGAGCATATGCTGTGGCCTTTCTGCA 20963 >seq2446 Length=565066 Score = 84.2 bits (92), Expect = 3e-11 Identities = 246/372 (66%), Gaps = 13/372 (3%) Strand=Plus/Minus Query 169537 ATGACTCC--TATCAATCCTATGTTGGCCGAATCATGCGATTCTGTTAACAAGGCATTTA 169594 |||||||| ||| | ||||||||||| ||| | ||| | || || | | |||| | | Sbjct 540529 ATGACTCCAGTATTA--CCTATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGA 540472 Query 169595 AAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGACGGTGAACGAGTGCAAGTTC 169654 | |||| ||| || ||||| |||| ||||||||||||||||| | || ||||| | Sbjct 540471 AGAAATGTCCTAACGGAATGTTCTCAGAGATCAAATATGACGGTGAAAGGGTACAAGTGC 540412 Query 169655 ATAAAAATAATAACAACTTT---GCCTTCTTTAGTAGAAATATGAAACCAGTTTTACCAC 169711 ||||||| || | ||| |||| ||| || | || ||||| ||| | ||| Sbjct 540411 ATAAAAAAGGGAATGAGTTTAAATATTTCTCTAG-AGCATTA--AAACCTGTTATGGCAC 540355 Query 169712 ATAAAGTTGATTATCTCAAAGAATACCTTCCTAAAGCATTTAAAAAAGCTACGTCTATTA 169771 ||||||| | || | || || || | || |||||||| ||| | || | | | Sbjct 540354 ATAAAGTCAGTCATTTTAAGGATTATTTACCACAAGCATTTCCAAAGGGGACCGATTTGA 540295 Query 169772 TCTTGGATTCTGAAATTGTTCTAGTTGA--CGAACACAATATA-CCACTTCCGTTTGGAA 169828 | | ||| ||||| || | | || || ||| ||| | | || | || ||||| | Sbjct 540294 TTCTTGATGCTGAAGTTTTGATGGTAGATGTGAATACAGGAAAGCCTTTGCCATTTGGTA 540235 Query 169829 GTTTAGGAATACACAAAAAGAAAGAATATAAAAACTCTAATATGTGTTTGTTCGTCTTTG 169888 |||| || || ||| || |||| ||| | | | | ||| |||| || |||| Sbjct 540234 CACTAGGTATCCATAAACAGTCTGAATTCAAAGATGCACAAGTATGTCTGTTTGTGTTTG 540175 Query 169889 ATTGTCTATACT 169900 | ||| |||||| Sbjct 540174 ACTGTTTATACT 540163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907887752000