Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hermetia_20illucens_20[genbank_20GCA_5F001014895.1_202015-05-28] 319,196 sequences; 890,457,210 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq216702 185 1e-41 seq21991 86.0 9e-12 >seq216702 Length=10464 Score = 185 bits (204), Expect = 1e-41 Identities = 263/368 (71%), Gaps = 9/368 (2%) Strand=Plus/Plus Query 38410 ACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTT 38469 ||||| || || | | |||||||||||| ||||| || |||| || ||||| || ||| Sbjct 1857 ACATATGGCGCTAAAATTTCGTCAATACGGTTAATGGTTGTGCCCCCATAAATATGGCTT 1916 Query 38470 GCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTT 38529 || ||||| |||||||| || || ||||| | ||||| ||||| || || | Sbjct 1917 GCAACTTGGGCAATAATTTGTGCAGTAACGGCTGTTGCGGTTGAAATAGACTTTGGCGGC 1976 Query 38530 TCGATCTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAAC 38589 || || | ||||||||||| |||||| | ||||||||||| | || || ||| Sbjct 1977 TCTATTTCGGCATTTCCCATTTTAAACCCGTTAGTTAACATGCCTTCAAGGTCAATTAAC 2036 Query 38590 ATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGCCT 38649 || |||||||||||||| ||||| |||| |||||| || ||||| |||| | || Sbjct 2037 ATACAGTTAAACATTGGAAAGAAGGGAGCATAGTCGAGGTCATGATAGTGAATTTCACCG 2096 Query 38650 TTTTCGTGTGCTTGCATAACTTCAAC---AGG---AAGATAATGCTTTGCAAAGTGCTTA 38703 ||||||||| ||||| || | || || || || |||||| |||| ||| Sbjct 2097 CGTTCGTGTGC---GATAACGACATCTCTTGGTAAAATATGCTGTTTTGCATAGTGTTTA 2153 Query 38704 CTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCA 38763 |||||||| || | | ||||||||| || ||||| |||||| |||||| || ||| Sbjct 2154 GCGACAATACCCGCGAGTAAATCGCGTTGTGTCGGGATCACTTTACTGTCTTTATTGGCA 2213 Query 38764 TTCTCATT 38771 || ||||| Sbjct 2214 TTTTCATT 2221 Score = 102 bits (112), Expect = 1e-16 Identities = 252/379 (66%), Gaps = 5/379 (1%) Strand=Plus/Plus Query 37695 GTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGCCACGCT 37754 |||||| | || | || || |||||||||||||| | || | ||| || || || | Sbjct 968 GTCATCCGCTTTTAAGCGAACTCCGCAGGCGCCTTCCATATACAAAATTGGGGCAACACG 1027 Query 37755 TGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTACTTCCAT 37814 || || ||| | ||| ||| || ||||| |||| ||| | | | | Sbjct 1028 CGCTTTTACGGTTTCTAAACGGGCAATGCGAGTCATTAAGGCTTTTTTGGCAATGGCTAA 1087 Query 37815 ACGCTCTTCCAGAAGCTCCCAGAAACGCATATGAT-TGCCGTTTGCGTCGAGTGCGATAC 37873 ||| || ||||| | |||| |||||||| | |||| | ||| |||| || |||| Sbjct 1088 ACGTTCATCCAGTAATGCCCA-AAACGCATCTTCGCTGCCCTGTGCTTCGATAGCAATAC 1146 Query 37874 GCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCCAT 37933 | |||| ||| || ||| ||| |||| ||| || || || ||||||| || | |||| Sbjct 1147 GAGGCAAATTGAGGCTAATAACGCCTAAATTGTTGCGCCCATCGTGAATTTGTTGCCCAT 1206 Query 37934 TTTCGTCTTCCCAACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAGCTGCCAG 37993 |||| || | || ||||||||||||||| ||||| || ||||| |||| Sbjct 1207 TTTCCTCATAGATACC---CAAGAAACTGCGGCAGCCCATCGGCGTTTTAAATGATCCAG 1263 Query 37994 TTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACT 38053 | ||||| || || || | |||||||| || ||||| |||||| || |||| Sbjct 1264 TAACATCAACGACACGGTCGTAGTTAAGAATATCGGGGTACATGCGCTTACTGGCACACT 1323 Query 38054 CCAGTGCCAGTTGCTTGAT 38072 | | || ||||| || || Sbjct 1324 CTAAAGCGAGTTGTTTTAT 1342 >seq21991 Length=9696 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43739 GTAGCAGCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATAT 43798 || ||||| ||||| || || ||||| || || ||| ||| |||||||| ||||| | | Sbjct 6183 GTTGCAGCACCACCACGAACGCCACCTTGCGAACAAGATTTCACCGCAGTTTGGAAGTGT 6124 Query 43799 TTCCAGAACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAAT 43845 || ||||||||||| |||||||||| ||||||||| ||||| Sbjct 6123 TTATAGAACGGAATACAACCAGTGTGGAACGCTTCACCACCACGAAT 6077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743243416319040