Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq31147 100 6e-17 seq31432 80.6 5e-11 >seq31147 Length=2015 Score = 100 bits (110), Expect = 6e-17 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 21465 TGCATCCTCTAAATGGTCGGGTGCAAAGTGCGCATATCGCATGGTCATTTTTATATCTGT 21524 |||||| | | ||| || || || || || | ||| ||||| |||||||| ||||| || Sbjct 1435 TGCATCATTAAGATGATCTGGGGCGAAATGGGAATACCGCATTGTCATTTTAATATCGGT 1376 Query 21525 ATGGCCGAGTACGCGCTGCAACACCAAAATATTACCGCCATTCATCATAAAGTGACTAGC 21584 |||||| || | | || || || |||||||| || || ||||||||||||| || Sbjct 1375 ATGGCCAAGGATTCTTTGTAATACTAAAATATTTCCACCTGACATCATAAAGTGAGATGC 1316 Query 21585 GAAGGTGTGACGTAAAACGTGGGTAAGTTGTCCTGCCGGTAGTTCGATACCTGTTCTTTC 21644 || ||||| |||||||| || | ||| | | | |||| || |||||||| | | Sbjct 1315 AAAAGTGTGGCGTAAAACATGTGATGATTGGCGTTCAGGTAACTCAATACCTGTGCGCTT 1256 Query 21645 CAAAGCTGACCGGAACGCGCCATAACAA 21672 || || || || || || ||||||| Sbjct 1255 TAATGCAGAACGAAATGCAGAATAACAA 1228 >seq31432 Length=2868 Score = 80.6 bits (88), Expect = 5e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 20977 CTTAAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 21030 || |||||||||||||||| ||||||||||||||| |||||| ||||||||||| Sbjct 1988 CTAAAATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGT 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97720276649208