Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 174 1e-38
>seq21713
Length=22343
Score = 174 bits (192), Expect = 1e-38
Identities = 447/669 (67%), Gaps = 20/669 (3%)
Strand=Plus/Minus
Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608
|||||||||||| | ||||| |||| || |||||| ||| ||| ||| | ||
Sbjct 18906 GATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATCTACGC 18847
Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668
|| || || | ||||| ||||| |||||||||||| | || || | ||||| ||
Sbjct 18846 GATAGCTTCCCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAGAAGAATTA 18787
Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728
| |||||||| || || || ||| | || || | ||| |||| |||||
Sbjct 18786 CTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAATATCCACATT 18727
Query 18729 TGGGATATATACGGATCGAGCAAATTTCTAAATAGGAAT--GGCTTCCATAAAAGACACA 18786
|||||| | | | | || |||| || ||| ||| || || | | || |
Sbjct 18726 TGGGATGGAAATAGCACCAGAGAATTCTTAGATA--AATCAGGATTTGAGGATCGAGAAG 18669
Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846
|| || | ||||| | || || || || ||||| || || || || |||||||||
Sbjct 18668 TTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAATATAAAA 18609
Query 18847 ACTGTCA-ATCAA--ACTATTTACAGCAAGGAATCGATCAGCT---GCAAACTGTTATAG 18900
||||| | || || || |||| ||||| ||||| | |||| || || |
Sbjct 18608 CATGTCACAGTAATTACGATGGACAG---GGAATTGATCAATTAAAGCAA---GTCATCG 18555
Query 18901 ATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGG 18960
| |||||| || || ||| | ||||||| ||||| | |||||||||||| |
Sbjct 18554 AGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAATCG 18495
Query 18961 ATATCCCCTTAATGGTACTACCTCCATGTCA-CACGTTATGTCAGTTTTACGTTGCAAAC 19019
| || || ||||| ||||||||| || || |||| ||| |||||||| || ||
Sbjct 18494 ACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTAT-TCAATTTTACGTGGCTAAT 18436
Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079
|| |||||||| || || | || || ||||| | |||||||| ||||| || || ||
Sbjct 18435 GGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTTTT 18376
Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC 19139
|| || || | ||||| | || || ||||| |||| || | ||| | ||||| ||
Sbjct 18375 AATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACA-AATTTAAAGCC 18317
Query 19140 -GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTT 19198
|||||||| | || || | || ||||| ||| |||| || |||||||| || | |
Sbjct 18316 TGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCGCT 18257
Query 19199 AAAAGTGCA 19207
||||| |||
Sbjct 18256 AAAAGAGCA 18248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398854997512230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |