Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq21713 174 1e-38 >seq21713 Length=22343 Score = 174 bits (192), Expect = 1e-38 Identities = 447/669 (67%), Gaps = 20/669 (3%) Strand=Plus/Minus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608 |||||||||||| | ||||| |||| || |||||| ||| ||| ||| | || Sbjct 18906 GATCGAACAGGAGTTGGAACCGTATCCTTGTTTGGAGCACAAATGAGATTTAATCTACGC 18847 Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668 || || || | ||||| ||||| |||||||||||| | || || | ||||| || Sbjct 18846 GATAGCTTCCCATTATTAACAACAAAACGTGTTTTTTGGCGTGCAGTTGCAGAAGAATTA 18787 Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728 | |||||||| || || || ||| | || || | ||| |||| ||||| Sbjct 18786 CTTTGGTTTATTCGTGGCAGCACAGATGCTAAGCTGCTACAAGAAAAAAATATCCACATT 18727 Query 18729 TGGGATATATACGGATCGAGCAAATTTCTAAATAGGAAT--GGCTTCCATAAAAGACACA 18786 |||||| | | | | || |||| || ||| ||| || || | | || | Sbjct 18726 TGGGATGGAAATAGCACCAGAGAATTCTTAGATA--AATCAGGATTTGAGGATCGAGAAG 18669 Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846 || || | ||||| | || || || || ||||| || || || || ||||||||| Sbjct 18668 TTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAATATAAAA 18609 Query 18847 ACTGTCA-ATCAA--ACTATTTACAGCAAGGAATCGATCAGCT---GCAAACTGTTATAG 18900 ||||| | || || || |||| ||||| ||||| | |||| || || | Sbjct 18608 CATGTCACAGTAATTACGATGGACAG---GGAATTGATCAATTAAAGCAA---GTCATCG 18555 Query 18901 ATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGG 18960 | |||||| || || ||| | ||||||| ||||| | |||||||||||| | Sbjct 18554 AGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAATCG 18495 Query 18961 ATATCCCCTTAATGGTACTACCTCCATGTCA-CACGTTATGTCAGTTTTACGTTGCAAAC 19019 | || || ||||| ||||||||| || || |||| ||| |||||||| || || Sbjct 18494 ACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTAT-TCAATTTTACGTGGCTAAT 18436 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || |||||||| || || | || || ||||| | |||||||| ||||| || || || Sbjct 18435 GGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTTTT 18376 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC 19139 || || || | ||||| | || || ||||| |||| || | ||| | ||||| || Sbjct 18375 AATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACA-AATTTAAAGCC 18317 Query 19140 -GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTT 19198 |||||||| | || || | || ||||| ||| |||| || |||||||| || | | Sbjct 18316 TGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCGCT 18257 Query 19199 AAAAGTGCA 19207 ||||| ||| Sbjct 18256 AAAAGAGCA 18248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398854997512230