Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq21713 259 3e-64 >seq21713 Length=22343 Score = 259 bits (286), Expect = 3e-64 Identities = 434/625 (69%), Gaps = 2/625 (0%) Strand=Plus/Plus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||| ||||| | ||| |||||| | |||| || || |||| || | | || || Sbjct 18109 TTAAACTGCCATTTCCATGTTAATTTTCGGGTAAGGATTGTAGTCTTGCATTTCAAAATC 18168 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 ||| |||| || || |||||| ||| |||| | | || ||||||| || Sbjct 18169 ATCAAAAGTAAAATCTTCTATGCATTCAACTTTTCGTTTTATAATGAGCTTTGGAAAAGG 18228 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 || || || |||| ||| ||| || | ||||| |||| || ||| | ||||| Sbjct 18229 TCGTGGCACACGATTCAATTGCTCTTTTAGCGGCTCAATATGATTTAAATAAACATGAGC 18288 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 ||| |||| || || | ||| ||||||||| || ||| |||| ||||| |||||| | Sbjct 18289 ATCGCCTAAGGTGTGCACAAAATCTCCAGGCTTTAAATTTGTGATGTGAGCTATCATGTA 18348 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 ||| | | || ||| || || || ||||| |||||||| | |||||||| |||||||| Sbjct 18349 AGTGAGCAAAGCATAACTTGCTATATTAAAAGGCACTCCAAGACCCATATCTGCTGATCT 18408 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATAC-ATGAC 101891 |||||||| ||||| || | | ||||| | || ||||||||| ||| || ||| | Sbjct 18409 TTGATACAACTGACATGATAATTCTCCATTAGCCACGTAAAATTGA-ATAAGACAATGGC 18467 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 |||| || | |||||||||||||||| ||||||||| ||| | || | || Sbjct 18468 AAGGAGGTAGTGCCATTTTAGGAATGTCGATTGGATTCCAAGCGGTCATAATAATTCGTC 18527 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 |||| | || || || || || || || | || |||||||| |||| ||| | || Sbjct 18528 TATCATTTGGATTGGTGTTAATTTGCTCGATGACTTGCTTTAATTGATCAATTCCCTGTC 18587 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071 | | |||| | | |||||||||||| || || |||||||| ||||| |||| Sbjct 18588 CATCGTAATTACTGTGACATGTTTTATATTCTGCCCCTAAGTGCCTCCATTGAAAACCAT 18647 Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131 | ||||| || | ||| || | |||| || | ||| || ||||||||| ||| || Sbjct 18648 ATACAGGGCCCAAATCGCCAACTTCTCGATCCTCAAATCCTGATTTATCTAAGAATTCTC 18707 Query 102132 TAGATCCATTCGCATCCCAAATGTG 102156 | | | ||| ||||||||||||| Sbjct 18708 TGGTGCTATTTCCATCCCAAATGTG 18732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360664339974794