Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq69808 672 0.0 seq50502 197 2e-45 seq3775 102 1e-16 >seq69808 Length=9325 Score = 672 bits (744), Expect = 0.0 Identities = 1267/1843 (69%), Gaps = 34/1843 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| |||||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 ||||| ||||||| |||| | || || |||| ||| ||||| | |||||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTT 53006 ||||| ||||| || || | ||||||||||||| || | || |||| || ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 53007 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATA 53062 |||||| |||||||| || || | || | || ||| | || | |||| | ||| Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 || |||| || | | || || |||| || || ||||||| |||||| | || ||| Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953 Query 53123 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 53181 ||| || | || ||| | ||||||||| |||||| ||||| ||||| | ||| Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 || ||||| ||||| || || | || || ||||| || |||||||| || ||||| Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 53301 ||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| || Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774 Query 53302 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 ||| || | ||||||||| ||||| | ||| ||| || Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714 Query 53362 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 ||||| | || | ||||| ||||||| || |||| || | ||||||| Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 ||| ||||| |||||||||||||| |||||||| ||||| || || | | ||||| | Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594 Query 53482 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 53541 |||||||| || ||| |||| ||| | | |||||| || || ||||| ||||| Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534 Query 53542 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 53601 || |||||||| || |||| ||| | ||| || ||| |||||||| | |||||| Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474 Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTT 53658 |||||||||||| ||||||||||| | |||| | |||||| |||| || || || Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417 Query 53659 CAGTTTGAGAAAATCAAATTGTCCAT---CTATTACAAACATGTTCAATGCAATAGATGC 53715 ||||| ||||||| ||| | || || | |||||||| || || ||||| || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775 | ||||||||| |||| |||| | | | ||||| | || || || || ||||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835 |||||| || ||||| || | |||||||||||||| ||| ||||||||||| ||||| Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACG 53895 | || |||| ||||||||||||| || ||||| || || || ||| | ||| Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 53896 AGCCTTTATT-ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954 || || ||| | ||| | | | ||| |||| ||| |||| | | | |||| Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014 | | || ||||| ||||| || |||||||||| || |||||||| || ||||| | Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058 Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074 | ||| | | || ||||||||||| | ||| |||||||| | || ||||| || Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998 Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 54134 | || | | |||||| || |||| ||||| ||||| | || | || | | ||||| Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938 Query 54135 CAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 54194 | | |||||| ||||| || || || | | | || || ||||| || || || |||| Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878 Query 54195 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 54254 | | |||||||| |||||| | || | |||||||| | | |||||| ||| || Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818 Query 54255 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCT 54310 |||| || || | || | | || | | ||| || || ||| ||| || || Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762 Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370 || || || || |||| || || | ||||||| ||| | | | | | || || || Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702 Query 54371 ATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 || |||||| | || |||||| || |||||| || | ||| |||||| ||| | Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 ||| |||||| || || || || || ||||| | ||| || | ||||| || || Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583 Query 54490 CTCGATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 || ||| | | || ||| | || | || || || ||||| |||||||||||||| | Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524 Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608 | || ||||||||| | || || || ||||| | ||| || ||| |||| || |||| Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464 Query 54609 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||| || || ||| || || || |||||||| Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAAT 6421 >seq50502 Length=11567 Score = 197 bits (218), Expect = 2e-45 Identities = 207/272 (76%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | ||| || ||||| |||| || |||||||| ||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||||||| || || ||||| | || || ||||| ||||||||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 | | ||||||||| || || || ||| |||||||||||| || || |||||| || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 ||||| ||| | |||| ||| | ||| | | |||||||| |||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 24635 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 |||||| ||||||||||||||||| || |||| Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Score = 154 bits (170), Expect = 2e-32 Identities = 195/264 (74%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 |||||| || ||||| |||||||| ||||| || || || || || || | |||||| Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||| || ||||| || | || ||||||| || || ||||| | ||||||||| | || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 ||| |||| ||||||||||||||| || || ||||| ||||||| |||||| || | Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 24296 ACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | || | | | | || ||||| | |||||||||||| || ||||| ||||| || Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 24353 CATTGTCTCTATAGCATTAAAGAG 24376 | ||| || |||||||| || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020 >seq3775 Length=22988 Score = 102 bits (112), Expect = 1e-16 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 147855 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATG 147914 |||||||||||| || | ||| ||||||| | ||| | || ||||||||| | || Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661 Query 147915 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 147974 ||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| || Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601 Query 147975 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATTATGGCAGTCT-TTC-TA 148032 || |||| || | ||||||| ||| ||| ||||| || | ||| | ||| || Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543 Query 148033 ATGGGTTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 148086 ||||| ||||| ||| | || | || |||||| || ||||| ||| ||||| Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTCA 6490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592732355913120