Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 672 0.0
seq50502 197 2e-45
seq3775 102 1e-16
>seq69808
Length=9325
Score = 672 bits (744), Expect = 0.0
Identities = 1267/1843 (69%), Gaps = 34/1843 (2%)
Strand=Plus/Minus
Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888
|| ||||| || |||| ||| |||||||| ||||||| ||| | ||||||| ||||||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948
||||| ||||||| |||| | || || |||| ||| ||||| | ||||||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTG--TGGAATTT 53006
||||| ||||| || || | ||||||||||||| || | || |||| || |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 53007 CCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATA 53062
|||||| |||||||| || || | || | || ||| | || | |||| | |||
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT-TGGTATATTATCAATTTCTTGTATA 8013
Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122
|| |||| || | | || || |||| || || ||||||| |||||| | || |||
Sbjct 8012 GAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCTGTT 7953
Query 53123 AAAACTCT-AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 53181
||| || | || ||| | ||||||||| |||||| ||||| ||||| | |||
Sbjct 7952 AAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACGATG 7894
Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241
|| ||||| ||||| || || | || || ||||| || |||||||| || |||||
Sbjct 7893 ATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGA 7834
Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 53301
||| || ||||| ||||| | || ||| ||||| | ||| | | | | ||||| ||
Sbjct 7833 TGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTC 7774
Query 53302 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361
||| || | ||||||||| ||||| | ||| ||| ||
Sbjct 7773 TTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTGAAG 7714
Query 53362 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421
||||| | || | ||||| ||||||| || |||| || | |||||||
Sbjct 7713 TATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAA 7654
Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481
||| ||||| |||||||||||||| |||||||| ||||| || || | | ||||| |
Sbjct 7653 TTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTT 7594
Query 53482 TTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 53541
|||||||| || ||| |||| ||| | | |||||| || || ||||| |||||
Sbjct 7593 CTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTG 7534
Query 53542 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 53601
|| |||||||| || |||| ||| | ||| || ||| |||||||| | ||||||
Sbjct 7533 TACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGGATA 7474
Query 53602 ATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTT 53658
|||||||||||| ||||||||||| | |||| | |||||| |||| || || ||
Sbjct 7473 ATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATT--TTTG-TAACTTCTTT 7417
Query 53659 CAGTTTGAGAAAATCAAATTGTCCAT---CTATTACAAACATGTTCAATGCAATAGATGC 53715
||||| ||||||| ||| | || || | |||||||| || || ||||| || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 53716 CAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATT 53775
| ||||||||| |||| |||| | | | ||||| | || || || || |||||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297
Query 53776 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 53835
|||||| || ||||| || | |||||||||||||| ||| ||||||||||| |||||
Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237
Query 53836 AAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACG 53895
| || |||| ||||||||||||| || ||||| || || || ||| | |||
Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177
Query 53896 AGCCTTTATT-ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954
|| || ||| | ||| | | | ||| |||| ||| |||| | | | ||||
Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118
Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014
| | || ||||| ||||| || |||||||||| || |||||||| || ||||| |
Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058
Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074
| ||| | | || ||||||||||| | ||| |||||||| | || ||||| ||
Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998
Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 54134
| || | | |||||| || |||| ||||| ||||| | || | || | | |||||
Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938
Query 54135 CAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 54194
| | |||||| ||||| || || || | | | || || ||||| || || || ||||
Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878
Query 54195 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 54254
| | |||||||| |||||| | || | |||||||| | | |||||| ||| ||
Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818
Query 54255 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGATAGACCT 54310
|||| || || | || | | || | | ||| || || ||| ||| || ||
Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--ATT--TATTCCA 6762
Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370
|| || || || |||| || || | ||||||| ||| | | | | | || || ||
Sbjct 6761 ATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCA 6702
Query 54371 ATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429
|| |||||| | || |||||| || |||||| || | ||| |||||| ||| |
Sbjct 6701 ATTGAATCATCAACCATTGTTAA-TAAAAAACATGATGATAATTGAGGACGACGTGTTGC 6643
Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489
||| |||||| || || || || || ||||| | ||| || | ||||| || ||
Sbjct 6642 TGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGT 6583
Query 54490 CTCGATAGCTGAGTCTATA-TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548
|| ||| | | || ||| | || | || || || ||||| |||||||||||||| |
Sbjct 6582 TTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATAT 6524
Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608
| || ||||||||| | || || || ||||| | ||| || ||| |||| || ||||
Sbjct 6523 GTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTT 6464
Query 54609 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||||||||||||| || || ||| || || || ||||||||
Sbjct 6463 TAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAAT 6421
>seq50502
Length=11567
Score = 197 bits (218), Expect = 2e-45
Identities = 207/272 (76%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||| | ||| || ||||| |||| || |||||||| ||||||| |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
|||||||| || || ||||| | || || ||||| ||||||||| || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574
| | ||||||||| || || || ||| |||||||||||| || || |||||| ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634
||||| ||| | |||| ||| | ||| | | |||||||| |||| ||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 24635 TTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
|||||| ||||||||||||||||| || ||||
Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383
Score = 154 bits (170), Expect = 2e-32
Identities = 195/264 (74%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175
|||||| || ||||| |||||||| ||||| || || || || || || | ||||||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235
||| || ||||| || | || ||||||| || || ||||| | ||||||||| | ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295
||| |||| ||||||||||||||| || || ||||| ||||||| |||||| || |
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 24296 ACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352
| || | | | | || ||||| | |||||||||||| || ||||| ||||| ||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 24353 CATTGTCTCTATAGCATTAAAGAG 24376
| ||| || |||||||| || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAG 5020
>seq3775
Length=22988
Score = 102 bits (112), Expect = 1e-16
Identities = 166/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 147855 ATTAGAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATG 147914
|||||||||||| || | ||| ||||||| | ||| | || ||||||||| | ||
Sbjct 6720 ATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGTTG 6661
Query 147915 GTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGT 147974
||||||||| ||| ||| ||| | || || ||||||||| |||| ||||| ||
Sbjct 6660 GTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTGGT 6601
Query 147975 AGTACTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATTATGGCAGTCT-TTC-TA 148032
|| |||| || | ||||||| ||| ||| ||||| || | ||| | ||| ||
Sbjct 6600 TGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTT--AAGTATATTCTTA 6543
Query 148033 ATGGGTTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 148086
||||| ||||| ||| | || | || |||||| || ||||| ||| |||||
Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAAC-AAAAGTTCA 6490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592732355913120
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