Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq21713 235 4e-57 >seq21713 Length=22343 Score = 235 bits (260), Expect = 4e-57 Identities = 407/586 (69%), Gaps = 4/586 (1%) Strand=Plus/Plus Query 97036 TGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATA 97095 |||||| | || | ||||| ||||| | ||||| |||||||| ||||| ||||| | | Sbjct 18248 TGCTCTTTTAGCGGCTCAATATGATTTAAATAAACATGAGCATCGCCTAAGGTGTGCACA 18307 Query 97096 AATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTA 97155 || |||||||| ||||| |||| || || ||||| |||| | | || ||| || Sbjct 18308 AAATCTCCAGGCTTTAAATTTGTGATGTGAGCTATCATGTAAGTGAGCAAAGCATAACTT 18367 Query 97156 GCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAA 97215 || || ||||||||||| || || |||||||| |||||||||||||| |||||||| || Sbjct 18368 GCTATATTAAAAGGCACTCCAAGACCCATATCTGCTGATCTTTGATACAACTGACATGAT 18427 Query 97216 AGCTTTCCATCACACACATAAAACTGACTCAATAC-ATGACAGGGGGGCAACGCCATTTT 97274 | | ||||| | ||| ||||| ||| | || || ||| || || || | |||||||| Sbjct 18428 AATTCTCCATTAGCCACGTAAAATTGAAT-AAGACAATGGCAAGGAGGTAGTGCCATTTT 18486 Query 97275 TGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTG 97334 |||| || | ||||||||| ||| | |||| |||||| |||| || |||| Sbjct 18487 AGGAATGTCGATTGGATTCCAAGCGGTCATAATAATTCGTCTATCATTTGGATTGGTGTT 18546 Query 97335 TATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAG 97394 || | || | |||||||||||||||| || | |||| | ||||| | | Sbjct 18547 AATTTGCTCGATGACTTGCTTTAATTGATCAATTCCCTGTCCATCGTAATTACTGTGACA 18606 Query 97395 ACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 || ||||||||| || || ||||||||||| || ||||| ||||| || | || || Sbjct 18607 TGTTTTATATTCTGCCCCTAAGTGCCTCCATTGAAAACCATATACAGGGCCCAAATCGCC 18666 Query 97455 TTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCA 97514 |||||| ||| || || |||||||| | || | | |||| ||||||| Sbjct 18667 AACTTCTCGATCCTCAAATCCTGATTTATCTAAGAATTCTCTGGTGCTATTTCCATCCCA 18726 Query 97515 AATGTGCACACCAGATGCTGCAAGC-TCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 |||||| | | | || ||| ||| || || || || | |||||||| | Sbjct 18727 AATGTGGATATTTTTTTCTTGTAGCAGCTTAGC-ATCTGTGCTGCCACGAATAAACCAAA 18785 Query 97574 ACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAA 97619 |||||||| |||| | | |||||| || | || |||||||| Sbjct 18786 GTAATTCTTCTGCAACTGCACGCCAAAAAACACGTTTTGTTGTTAA 18831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346220642239580