Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq82763 237 2e-57 seq21713 196 7e-45 seq34035 156 6e-33 >seq82763 Length=7752 Score = 237 bits (262), Expect = 2e-57 Identities = 280/384 (73%), Gaps = 0/384 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 |||||| | |||||||||||||||||||| | | |||||||||||| |||| Sbjct 4345 CCAACAAAACCATTTGGATCACGTCCATCAAGACTATATTTATCATTCAAATAAATTGCA 4286 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 ||||||| ||| ||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 4285 ATTTCTAATGCTTTTTCAGGTGATTCAGTCCATTCTAAAATTTTCTTAGCCCAATACATT 4226 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 |||||| | ||||||||||| || | | || ||| |||| | || |||||| | | Sbjct 4225 CTTAAAAAACCATGCATTTTTCCTTCTTGTACCAATTGAATTTGAGCTGAATTCCAGAGA 4166 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | ||||||||| || ||| | || || | | || |||| ||| |||| Sbjct 4165 TCATCATGAGTTTTTGAGCATTCTAATTCATCTTTTGTGTAAATATAACTTCGTTTATCT 4106 Query 203108 TTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA 203167 ||| ||||||||| || ||||||| |||||| | | |||| || |||||||| ||| Sbjct 4105 TTTCGATGTTCATTAAGAGTTTTTAAAGCCCAACTTGCAACACCTTTGATATTATCATAA 4046 Query 203168 TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAA 203227 |||| ||| || ||||||||||||| ||| |||| | || ||||| || ||||||||| Sbjct 4045 TTTTTATTGTAGAAACAAAAATTATCCGATAATTCTCTTCGTATAATTGCCTCTTCACAA 3986 Query 203228 AAAACTTCTACCGATTTAGGATAT 203251 || | ||||||| || |||| Sbjct 3985 AATGAAGCAACCGATTCAGAATAT 3962 Score = 141 bits (156), Expect = 1e-28 Identities = 483/732 (66%), Gaps = 33/732 (5%) Strand=Plus/Minus Query 203302 ACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATCATTTCtttt 203361 ||||||||| | |||||| || | ||| || ||||| | || ||||||||| | ||| Sbjct 3848 ACCAAAATGAAACCATGGAGAAAGATTTGATAGTGCATCATCAGCTGGATCATTACGTTT 3789 Query 203362 tttagcataatcttttaatctattttgtataaatatatctaat--attttaaatgcatat 203419 | | | | | ||| ||| | |||| | ||| || | ||| || | | |||| | Sbjct 3788 ATCTGAAAATTTTTTCAATTTTTTTTC-ACAAAAAT-TGTAAAGAATATCACATGCTGCT 3731 Query 203420 tttGTACCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTAATGATTGT 203479 | ||| | |||||||| ||| | ||| || ||||| || ||| |||| Sbjct 3730 CTATAACCGGGCTTTGCCCATTCGACATCATCTACAGTTTTATCACAATCTAAAGATTTA 3671 Query 203480 TCTGCttttttccaattattatttattttaatatatgtatt---ataagtatgttt-aat 203535 ||| | ||||| | || || | | | | |||| | ||||| |||||| ||| Sbjct 3670 AATGCAGCATCCCAATCAATACTTTTATGGTTTTTTGTACTTGAATAAGGATGTTTTAAT 3611 Query 203536 aataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTTATTTCTAATGGT 203595 | | | |||| | |||||||| |||||| ||| |||||||||| ||| || Sbjct 3610 ACTGGAGGGAAAT-CTGTTAAATAAATATCTAATTTTCCATTAATTTTATTTCGAATTGT 3552 Query 203596 TTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACAT-GGTACAATATTATGTGAAT 203654 | |||| | ||||||| |||| || ||| | || |||||||| ||||||| || Sbjct 3551 TCTTGCGGCATATTCTTGCTTATCTGATGCT-TCCCATATAGGTACAATGTTATGTGCAT 3493 Query 203655 CAACTTGATAAA------CATCAATATTTATTTTACTAATAAGTTGATTTACCCAAT-TA 203707 |||||||| ||| ||||| | || ||| | ||| || | ||||| | || Sbjct 3492 CAACTTGACAAAATGGTACATCATTCGGTAGTTTCATTTTAATTTTTTCAACCCATTCTA 3433 Query 203708 TTAAATATTTTAATAGGATAAAAATCAACAATCAATA-CACCAATATTATAtttttttAT 203766 || ||||| ||| ||||||| || ||| | | || ||||||| || || | Sbjct 3432 TTGGTGTCCTTAAT-GGACTAAAATCA-CATACAACAGCTCCTATATTATTTTCTTCAAC 3375 Query 203767 AAATTTTGGTAATACATCTACTGATATTCCTATCAATAGATGAAAATGTATATTTAAATT 203826 |||| || | | || || |||| | | |||||| | |||||||||||| Sbjct 3374 AAATAAGGGAATTTGTTCATTTGCAGGACCTAAAAGCAAATGAAATTTTATATTTAAATT 3315 Query 203827 TTTACATTCTTCTTCCATTTGTTTAACACCATTCAACATAAAATCAAATTGTCTAATTGT 203886 |||||| || ||| | || | || || || || | ||||| | | || | ||| || Sbjct 3314 TTTACAATCCATTTCAACTTCCTGAAGGCCTTTTAATAAAAAATTATAATGGCGAATGGT 3255 Query 203887 AGCATTAAGAAATTCTGGTACTAAACATATA-CACATATGTAATGAC----GATTTTGAT 203941 |||| |||||||| |||||| | ||| ||| || |||| ||| | | |||||| Sbjct 3254 TGCATCAAGAAATTTTGGTACAAGACA-ATAGCAAATATTTAAAGGCAACAGATTTT--- 3199 Query 203942 TTTAATGCTAATTCTTGTGCATAAATTAAACCCCAATTATCTTGAATTCTTTGATCTCTA 204001 |||||||||||| ||||||| | | || |||||||||||| || || ||||||| Sbjct 3198 -TTAATGCTAATTTTTGTGCAAATAGAAATGCCCAATTATCTTCAACTCGCGCATCTCTA 3140 Query 204002 -ACACACCAATA 204012 ||| |||||| Sbjct 3139 GACA-TCCAATA 3129 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 202762 ATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCT 202821 |||||| ||||| | ||||||| |||| |||| || | | ||||||||| | || || Sbjct 4513 ATCAAACTTACGCTTGCATCCTTGATAATTCATGTAACGTACTTTACCAAAAACTGACCT 4454 Query 202822 TTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 |||| |||| ||| ||||||||| |||| ||||||||||| ||||| Sbjct 4453 TTCTCTCCAGGCTTGATCATGAATTCCACCTATTGACCACATGCATCC 4406 >seq21713 Length=22343 Score = 196 bits (216), Expect = 7e-45 Identities = 437/652 (67%), Gaps = 7/652 (1%) Strand=Plus/Plus Query 205309 TCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttt 205368 || |||| || |||||| | | |||||||| || ||| ||| | ||||| | | Sbjct 18194 TCAACTTTTCGTTTTATAATGAGCTTTGGAAAAGGTCGTGGCACACGATTCAATTGCTCT 18253 Query 205369 tttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCA 205428 |||| | ||||||||| | ||| | ||| |||| || | | || | ||| || Sbjct 18254 TTTAGCGGCTCAATATGATTTAAATAAACATGAGCATCGCCTAAGGTGTGCACAAAATCT 18313 Query 205429 TATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACA 205488 || |||||||| || | || || ||||| ||||| | ||| |||||| || | | Sbjct 18314 CCAGGCTTTAAATTTGTGATGTGAGCTATCATGTAAGTGAGCAAAGCATAACTTGCTATA 18373 Query 205489 TTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATAT 205548 ||||| || || || | ||||||||| |||||||||||||||| |||||| |||| Sbjct 18374 TTAAAAGGCACTCCAAGACCCATATCTGCTGATCTTTGATACAACTGACAT----GATAA 18429 Query 205549 TTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTC 205607 || | |||| || | |||||| | || |||||| ||||| |||| |||| || Sbjct 18430 TTCTCCATTAGCCACGTAAAATTGAATAAGACAATGGCAAGGAGGTAGTGCCATTTTAGG 18489 Query 205608 AACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttat 205667 || || || |||||||| || || | || || |||| | || || | || || Sbjct 18490 AATGTCGATTGGATTCCAAGCGGTCATAATAATTCGTCTATCATTTGGATTGGTGTTAAT 18549 Query 205668 tttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTAT-CCATAT 205726 || | || | || |||||||||||| ||| || ||||| | | ||| | Sbjct 18550 TTGCTCGATGACTTGCTTTAATTGATCAATTCCCTGTCCATCGTAATTACTGTGACATGT 18609 Query 205727 CAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTT 205786 |||||| || || || || | ||||||||||||||| || || || ||||| || Sbjct 18610 -TTTATATTCTGCCCCTAAGTGCCTCCATTGAAAACCATATACAGGGCCCAAATCGCCAA 18668 Query 205787 CTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaa 205846 ||| || ||| | ||| || ||| | || ||| | | | |||| ||||||||| Sbjct 18669 CTTCTCGATCCTCAAATCCTGATTTATCTAAGAATTCTCTGGTGCTATTTCCATCCCAAA 18728 Query 205847 tatggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATA 205906 | ||||| ||| | || ||| | || | || || ||| |||||||| | || Sbjct 18729 TGTGGATATTTTTTTCTTGTAGCAGCTTAGCATCTGTGCTGCCACGAATAAACCAAAGTA 18788 Query 205907 ATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 ||||||| ||| | | | |||||| | ||||||||| |||||||| || Sbjct 18789 ATTCTTCTGCAACTGCACGCCAAAAAACACGTTTTGTTGTTAATAATGGGAA 18840 >seq34035 Length=19351 Score = 156 bits (172), Expect = 6e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || || ||||| || || ||||| | ||| | ||| | | Sbjct 10357 ATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCCTCT 10416 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| || || ||||||||||||||||| || || |||||| Sbjct 10417 GATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 10476 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || |||||| | |||||| | ||||| ||| |||||||| Sbjct 10477 CAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTATAAC 10536 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || |||||||| |||||||||||||| || | || | ||||| ||| ||| || Sbjct 10537 ATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGAGGAGGTGCTAAGAA 10592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754197278099200