Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq82763 237 2e-57
seq21713 196 7e-45
seq34035 156 6e-33
>seq82763
Length=7752
Score = 237 bits (262), Expect = 2e-57
Identities = 280/384 (73%), Gaps = 0/384 (0%)
Strand=Plus/Minus
Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927
|||||| | |||||||||||||||||||| | | |||||||||||| ||||
Sbjct 4345 CCAACAAAACCATTTGGATCACGTCCATCAAGACTATATTTATCATTCAAATAAATTGCA 4286
Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987
||||||| ||| ||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 4285 ATTTCTAATGCTTTTTCAGGTGATTCAGTCCATTCTAAAATTTTCTTAGCCCAATACATT 4226
Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047
|||||| | ||||||||||| || | | || ||| |||| | || |||||| | |
Sbjct 4225 CTTAAAAAACCATGCATTTTTCCTTCTTGTACCAATTGAATTTGAGCTGAATTCCAGAGA 4166
Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107
| ||||||||| || ||| | || || | | || |||| ||| ||||
Sbjct 4165 TCATCATGAGTTTTTGAGCATTCTAATTCATCTTTTGTGTAAATATAACTTCGTTTATCT 4106
Query 203108 TTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA 203167
||| ||||||||| || ||||||| |||||| | | |||| || |||||||| |||
Sbjct 4105 TTTCGATGTTCATTAAGAGTTTTTAAAGCCCAACTTGCAACACCTTTGATATTATCATAA 4046
Query 203168 TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAA 203227
|||| ||| || ||||||||||||| ||| |||| | || ||||| || |||||||||
Sbjct 4045 TTTTTATTGTAGAAACAAAAATTATCCGATAATTCTCTTCGTATAATTGCCTCTTCACAA 3986
Query 203228 AAAACTTCTACCGATTTAGGATAT 203251
|| | ||||||| || ||||
Sbjct 3985 AATGAAGCAACCGATTCAGAATAT 3962
Score = 141 bits (156), Expect = 1e-28
Identities = 483/732 (66%), Gaps = 33/732 (5%)
Strand=Plus/Minus
Query 203302 ACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATCATTTCtttt 203361
||||||||| | |||||| || | ||| || ||||| | || ||||||||| | |||
Sbjct 3848 ACCAAAATGAAACCATGGAGAAAGATTTGATAGTGCATCATCAGCTGGATCATTACGTTT 3789
Query 203362 tttagcataatcttttaatctattttgtataaatatatctaat--attttaaatgcatat 203419
| | | | | ||| ||| | |||| | ||| || | ||| || | | |||| |
Sbjct 3788 ATCTGAAAATTTTTTCAATTTTTTTTC-ACAAAAAT-TGTAAAGAATATCACATGCTGCT 3731
Query 203420 tttGTACCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTAATGATTGT 203479
| ||| | |||||||| ||| | ||| || ||||| || ||| ||||
Sbjct 3730 CTATAACCGGGCTTTGCCCATTCGACATCATCTACAGTTTTATCACAATCTAAAGATTTA 3671
Query 203480 TCTGCttttttccaattattatttattttaatatatgtatt---ataagtatgttt-aat 203535
||| | ||||| | || || | | | | |||| | ||||| |||||| |||
Sbjct 3670 AATGCAGCATCCCAATCAATACTTTTATGGTTTTTTGTACTTGAATAAGGATGTTTTAAT 3611
Query 203536 aataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTTATTTCTAATGGT 203595
| | | |||| | |||||||| |||||| ||| |||||||||| ||| ||
Sbjct 3610 ACTGGAGGGAAAT-CTGTTAAATAAATATCTAATTTTCCATTAATTTTATTTCGAATTGT 3552
Query 203596 TTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACAT-GGTACAATATTATGTGAAT 203654
| |||| | ||||||| |||| || ||| | || |||||||| ||||||| ||
Sbjct 3551 TCTTGCGGCATATTCTTGCTTATCTGATGCT-TCCCATATAGGTACAATGTTATGTGCAT 3493
Query 203655 CAACTTGATAAA------CATCAATATTTATTTTACTAATAAGTTGATTTACCCAAT-TA 203707
|||||||| ||| ||||| | || ||| | ||| || | ||||| | ||
Sbjct 3492 CAACTTGACAAAATGGTACATCATTCGGTAGTTTCATTTTAATTTTTTCAACCCATTCTA 3433
Query 203708 TTAAATATTTTAATAGGATAAAAATCAACAATCAATA-CACCAATATTATAtttttttAT 203766
|| ||||| ||| ||||||| || ||| | | || ||||||| || || |
Sbjct 3432 TTGGTGTCCTTAAT-GGACTAAAATCA-CATACAACAGCTCCTATATTATTTTCTTCAAC 3375
Query 203767 AAATTTTGGTAATACATCTACTGATATTCCTATCAATAGATGAAAATGTATATTTAAATT 203826
|||| || | | || || |||| | | |||||| | ||||||||||||
Sbjct 3374 AAATAAGGGAATTTGTTCATTTGCAGGACCTAAAAGCAAATGAAATTTTATATTTAAATT 3315
Query 203827 TTTACATTCTTCTTCCATTTGTTTAACACCATTCAACATAAAATCAAATTGTCTAATTGT 203886
|||||| || ||| | || | || || || || | ||||| | | || | ||| ||
Sbjct 3314 TTTACAATCCATTTCAACTTCCTGAAGGCCTTTTAATAAAAAATTATAATGGCGAATGGT 3255
Query 203887 AGCATTAAGAAATTCTGGTACTAAACATATA-CACATATGTAATGAC----GATTTTGAT 203941
|||| |||||||| |||||| | ||| ||| || |||| ||| | | ||||||
Sbjct 3254 TGCATCAAGAAATTTTGGTACAAGACA-ATAGCAAATATTTAAAGGCAACAGATTTT--- 3199
Query 203942 TTTAATGCTAATTCTTGTGCATAAATTAAACCCCAATTATCTTGAATTCTTTGATCTCTA 204001
|||||||||||| ||||||| | | || |||||||||||| || || |||||||
Sbjct 3198 -TTAATGCTAATTTTTGTGCAAATAGAAATGCCCAATTATCTTCAACTCGCGCATCTCTA 3140
Query 204002 -ACACACCAATA 204012
||| ||||||
Sbjct 3139 GACA-TCCAATA 3129
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 202762 ATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCT 202821
|||||| ||||| | ||||||| |||| |||| || | | ||||||||| | || ||
Sbjct 4513 ATCAAACTTACGCTTGCATCCTTGATAATTCATGTAACGTACTTTACCAAAAACTGACCT 4454
Query 202822 TTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869
|||| |||| ||| ||||||||| |||| ||||||||||| |||||
Sbjct 4453 TTCTCTCCAGGCTTGATCATGAATTCCACCTATTGACCACATGCATCC 4406
>seq21713
Length=22343
Score = 196 bits (216), Expect = 7e-45
Identities = 437/652 (67%), Gaps = 7/652 (1%)
Strand=Plus/Plus
Query 205309 TCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttt 205368
|| |||| || |||||| | | |||||||| || ||| ||| | ||||| | |
Sbjct 18194 TCAACTTTTCGTTTTATAATGAGCTTTGGAAAAGGTCGTGGCACACGATTCAATTGCTCT 18253
Query 205369 tttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCA 205428
|||| | ||||||||| | ||| | ||| |||| || | | || | ||| ||
Sbjct 18254 TTTAGCGGCTCAATATGATTTAAATAAACATGAGCATCGCCTAAGGTGTGCACAAAATCT 18313
Query 205429 TATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACA 205488
|| |||||||| || | || || ||||| ||||| | ||| |||||| || | |
Sbjct 18314 CCAGGCTTTAAATTTGTGATGTGAGCTATCATGTAAGTGAGCAAAGCATAACTTGCTATA 18373
Query 205489 TTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATAT 205548
||||| || || || | ||||||||| |||||||||||||||| |||||| ||||
Sbjct 18374 TTAAAAGGCACTCCAAGACCCATATCTGCTGATCTTTGATACAACTGACAT----GATAA 18429
Query 205549 TTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTC 205607
|| | |||| || | |||||| | || |||||| ||||| |||| |||| ||
Sbjct 18430 TTCTCCATTAGCCACGTAAAATTGAATAAGACAATGGCAAGGAGGTAGTGCCATTTTAGG 18489
Query 205608 AACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttat 205667
|| || || |||||||| || || | || || |||| | || || | || ||
Sbjct 18490 AATGTCGATTGGATTCCAAGCGGTCATAATAATTCGTCTATCATTTGGATTGGTGTTAAT 18549
Query 205668 tttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTAT-CCATAT 205726
|| | || | || |||||||||||| ||| || ||||| | | ||| |
Sbjct 18550 TTGCTCGATGACTTGCTTTAATTGATCAATTCCCTGTCCATCGTAATTACTGTGACATGT 18609
Query 205727 CAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTT 205786
|||||| || || || || | ||||||||||||||| || || || ||||| ||
Sbjct 18610 -TTTATATTCTGCCCCTAAGTGCCTCCATTGAAAACCATATACAGGGCCCAAATCGCCAA 18668
Query 205787 CTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaa 205846
||| || ||| | ||| || ||| | || ||| | | | |||| |||||||||
Sbjct 18669 CTTCTCGATCCTCAAATCCTGATTTATCTAAGAATTCTCTGGTGCTATTTCCATCCCAAA 18728
Query 205847 tatggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATA 205906
| ||||| ||| | || ||| | || | || || ||| |||||||| | ||
Sbjct 18729 TGTGGATATTTTTTTCTTGTAGCAGCTTAGCATCTGTGCTGCCACGAATAAACCAAAGTA 18788
Query 205907 ATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958
||||||| ||| | | | |||||| | ||||||||| |||||||| ||
Sbjct 18789 ATTCTTCTGCAACTGCACGCCAAAAAACACGTTTTGTTGTTAATAATGGGAA 18840
>seq34035
Length=19351
Score = 156 bits (172), Expect = 6e-33
Identities = 176/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || || ||||| || || ||||| | ||| | ||| | |
Sbjct 10357 ATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCCTCT 10416
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| | ||| || || ||||||||||||||||| || || ||||||
Sbjct 10417 GATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 10476
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | ||||| || || |||||| | |||||| | ||||| ||| ||||||||
Sbjct 10477 CAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTATAAC 10536
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| |||||||| |||||||||||||| || | || | ||||| ||| ||| ||
Sbjct 10537 ATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGAGGAGGTGCTAAGAA 10592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754197278099200
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